Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1175 CGAGAGAATACCCAAATAAATGACATCACTCGAGTCTTAATTGATAAATTGGATCACGAGTTCTATCACTATATCAATGATTTAATAGGGATACAACCTCATATAGAAGAACTAGAAAGGCTTCTAAACTTGAATTCACACGAGGATAATGACCTTCGAGTTCTTGGAATTTGGGGTATGGGCGGAATAGGAAAGACAATTCATGCTATGGTATTGTACGATAAAATCTCTTATCAGTTTGATGCTTGCTGTTTCATCCAGGATGTAAGCACAATTTATAGAAATCATGGTTGGGATAAGGCTCCTACTGAAATACAAAAGGCCATTCTTTGTCAAACTGTTCAAGAAGAAAATCTGGAAACAAAAAGTCCTATGGGCATAGCTAGGATCCTACACAATAGGCTATGTAACCCAAAAATCCCTAAAAAGGTCCTTATAGTTCTTGACAATGTTGATGAACAAAGGCAATGGGATACTTTGCGCTTAAATCCAAGATCACTTGGGAGAGGAAGCAGAGTTATCATAACAACAAGGAATCAGCATGTTCTTAATGTGAGTGGAGCAGATACAATCTATGAGGTTCCACTATTGAATGATAATGAGGCTCTTGAGTTGTTCCTAAGAAAAGCCTTCAGAAATGGTCCCCCTAAGAAAATTATTAGTGACGTAATTCTTGAGATACTAGATTATGCTCAAAGTCTTCCATTGGCAATTGAGGCACTAGGTAATGACTTGTATAACATGGAAGAGAAATTATGGAAAAATGCATTGGAAGACTGGAGAGAATGTCCAAAAGAAAATGTTATGAGTGTGCTGCAGAAAAGTTATGACCAAGTAAATATAAATGAGAGAAGAATATTTTTGGACATAGCTTGTTTCTTCGCAGGAAAGAGGAAGAACTTTATAGAGCATATTCTAAGTAGCTGTTGTGGCGATGAATCATCACGTCATGACCTTGCAATTCAAAATATCAGGAGAAATTCACTCATAACTATTAGGAACCATGAAATTCATATGCATAATATGTTACAAGAATTAGGAAAGAAAATTGTTCGGGGAGAATATCCAAAAGAGCCAATGTATTGGACTAGATTGTGGCATGTCAAGGATCTCGAAGCAGTCCTAAAGTCAGATATGGAGTGGAACAATAATGAAGCCATAGTTTTAGATGAGGTAGACGTCACCAAATGCAGACATTTGCGGATTCAAAAATTGTTTGAAAAGAGAAATCTTACACTACTCATATTACATTTTCAGAATTTTCCAGAACTCAATTTTGTTCCTATATTTCAAACCGAAATGCGGTATCTTTTGTGGCACGGTTACCCTTTCCCTTCTTTGCAACTACTCATATGGCGTAACCTTGTTGAATTGAATCTACCGAACAGCAGAGTTCAACAACTATGGGATGAGATTCAGTTAATCCCAAATTTGAAAAGGATGGACTTGAGCAACTCAAGAAATCTTAGAACCACCCCAAACTTTGCAAGCTGTCCAGGACTTGTGCGGCTGGATCTTACAGGATGCATAAACCTAACTGAAGTCCATGATTCAATCGGACTTCTCAGAGAGCTTAATTACTTGAGTTTGCGAGAATGTAGCAGTCTATCCCTTCTTGATTTCGGCCCTAATTGCCAGTTAAGTTCCCTAAGAACTCTACTGCTCTCTGGCTGCACCAACCTCCAGAAAACACCAAATTTCAAAGCGCTTTCAAATCTTAGGTACCTTGATCTTGAGCGATGCACAAGTTTGTCCACAATGCATGAGTCTATTGGTACTCTTGTAACGCTTAAGTACTTGAGTCTGAGAGGCTGCAAAAATCTTGTTCATGCACCTTACATTCTCAATGGCAACTCATCCCTCCTAATTCTGGATTTGAGCGGTTGCATGATGATAACCAACCTTCCCCGCTGCAGACGAAAATTTGCGCCTTCCTCCTGCCTGGAATCTTTGATGGTTTTGAGTCCTGTCTTCCTTGAGCCACAAAGAATTCTTGATTTTGTTGGAGAGTTGATGTTTTTCGATGGGGAGTGGATTTGTTCTAAGCTAGCATATTTAAACTTGGCGCACTGTCATGAACTTAGAAGATTTCCCGAGGCTTCATTTCATGGGTTTCATTGGATAAAAGATGAAGGAAAAGGTGTTTGGGAACTGAGGACAGAGGTAAGACCAGAACAAAAGTCATGGCCAAGGAGTGGTTCAGACTTCAGAGAGATAGATATGTCCCAAGAATCGAAGAACTGGAACAGGTGCTTTGATTTGGATGGCATAATGCCTCTGGTGAGTCTAGCCAAATCATTAAACTATTGA 2310 0.3905 RENTQINDITRVLIDKLDHEFYHYINDLIGIQPHIEELERLLNLNSHEDNDLRVLGIWGMGGIGKTIHAMVLYDKISYQFDACCFIQDVSTIYRNHGWDKAPTEIQKAILCQTVQEENLETKSPMGIARILHNRLCNPKIPKKVLIVLDNVDEQRQWDTLRLNPRSLGRGSRVIITTRNQHVLNVSGADTIYEVPLLNDNEALELFLRKAFRNGPPKKIISDVILEILDYAQSLPLAIEALGNDLYNMEEKLWKNALEDWRECPKENVMSVLQKSYDQVNINERRIFLDIACFFAGKRKNFIEHILSSCCGDESSRHDLAIQNIRRNSLITIRNHEIHMHNMLQELGKKIVRGEYPKEPMYWTRLWHVKDLEAVLKSDMEWNNNEAIVLDEVDVTKCRHLRIQKLFEKRNLTLLILHFQNFPELNFVPIFQTEMRYLLWHGYPFPSLQLLIWRNLVELNLPNSRVQQLWDEIQLIPNLKRMDLSNSRNLRTTPNFASCPGLVRLDLTGCINLTEVHDSIGLLRELNYLSLRECSSLSLLDFGPNCQLSSLRTLLLSGCTNLQKTPNFKALSNLRYLDLERCTSLSTMHESIGTLVTLKYLSLRGCKNLVHAPYILNGNSSLLILDLSGCMMITNLPRCRRKFAPSSCLESLMVLSPVFLEPQRILDFVGELMFFDGEWICSKLAYLNLAHCHELRRFPEASFHGFHWIKDEGKGVWELRTEVRPEQKSWPRSGSDFREIDMSQESKNWNRCFDLDGIMPLVSLAKSLNY* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1175 769 SUPERFAMILY L domain-like 352 698 - -
Amo18g1175 769 Gene3D - 20 190 IPR027417 -
Amo18g1175 769 Gene3D - 196 280 IPR042197 -
Amo18g1175 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 290 IPR027417 -
Amo18g1175 769 Gene3D Ribonuclease Inhibitor 319 710 IPR032675 -
Amo18g1175 769 Pfam NB-ARC domain 44 279 IPR002182 GO:0043531
Amo18g1175 769 Pfam Leucine Rich Repeat 454 473 IPR011713 -
Amo18g1175 769 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 4 563 - -
Amo18g1175 769 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 563 630 - -
Amo18g1175 769 SUPERFAMILY "Winged helix" DNA-binding domain 268 375 IPR036390 -
Amo18g1175 769 PRINTS Disease resistance protein signature 568 584 - -
Amo18g1175 769 PRINTS Disease resistance protein signature 54 69 - -
Amo18g1175 769 PRINTS Disease resistance protein signature 138 152 - -
Amo18g1175 769 PRINTS Disease resistance protein signature 231 245 - -
Amo18g1175 769 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 563 IPR044974 GO:0006952
Amo18g1175 769 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 563 630 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1175 Amo-Chr18 20312401 20317218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1175 29 637 WRKY Transcription Factor Family AT5G45050 28.790 1.07e-57 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1175 - - adu:107462448 813.142