Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1173 ATGGAGTCATCAGTCGAGAGCGCATCATCAACTTCCGCCGGTTGGTCATGGACGATTTGCCTTTTCACCTTAGGTGTGTTTCTTGGTACATTCATGCCAAGCATGTTCCTCTCTTGGAAATCATCCCTGGAGAGGAAGATCCTGCGGGGCTTATTTGGTTATCGGTCATCATCTTTCGCGCCAGCGTGTCCTCCTCTTCCCATGGAAGAGATAGCTGTCACTAATGAGGAACCTTCAACATCCAAGAGCATTATTGAAAGGAAATCATTACTGCAGCAGAACGACGACTACAAATATGATGTGTTTCTAAGTTTTATAGGTACTGACTCCAGCAAAAATTTTACTCGTTTTCTTAACCAATCTATGATCGGCAAAGGTATTTCCACCTTTAAGGTTAACAAGAGGCTAGATGAAGAAGCAATAGATCCAATACCACCACAACATATCTTGCAAGCAATTAGAGCTTCACGGATTTCTATAGTTGTCTTCTCAAGAGATTATGCTCGATCAACCTGGTGTTTGGAGGAATTGGCTACCATCATGGATTGCAGTAAAGACCGGTTGAATCAAGTTGTTTTTCCGGTTTACTATGATATGGAGCGGATTCATGTGCAACGTCAGACTGGGGCATACGAAGATGCCTTTCTTTTGCATTCAAAGAAATTCAAACGGCAAGAGGTTGACCGATGGAGGAAAGCTATGGATGACTTGACCAATTGGAGATATTGGATCATAAAAAAAAGTTCAGAAATTAAGGATAGTGAGAGTCTCGTTCAGCAGGTGTTAAACAAATTAGTTTCTAAATTGTCAAGGTGTGATTCTGATGATTTGGTTGGAAATCAACTCCCCCCGAAGGTGACGAATAAAGATAGCCACTTAAGCATGATCACTCTGATTTCCAACGCTAATATGTATGAATCTCCAGTGTCCATTGGCACTGATTGCTCTCTGATTTCCAGTTCCACGCTTCCCAAAATCTCATCTCCCACTGCACCATCACTCTCTAAATACCGGTCTCATTATTCTTCTTCCTATAGTACCTATACACCAAGTTATGCGCCAACGTGGAATATATCATATCCATCGCGGTCAAGCTCTGCTGATGATTCGGTTCGGTTACGACCCTCCATGGGCTCCAAGGTCATTAACAGTAACCAGTCGGGCCAGCAAAATCCACCTCTCCGGGCTAATAATTTCCTTTCCTCTCACGTAAATGAGAGAACAACACCGGCATCAACATCAAGAATGAGCAAATCAGATTCACACTTTTCGTTTGCCACAAGTAGTCCCCGAGCTTCATCAGTTGCAGCTCTTCCAAGTACATTTTTGGTAGCACCTAGGTTTGGCCCATTATTGGATAATAAATTCTCAAGTTCAAATATTGCATCAGCTTCCATTAGTAACCAAAGTGGAAAATCATCATCACAACAACGGCTCTACAAATATGATGTGTTTCTAAGCTTCAGAGGCAAAAGTACTCGCAACAACTTTGCTAATCATCTATGCAATTGTCTCATCAGGCTTGGTATTTCCACCTTCAGTTATGATAAGAGGGGCGAGAAAGAAGGAGATTGCATTATTCTTCCATCACAGGTCTTGCAAGCAATTCAAGATTCACAGATATCTATAGTTATCTTGACAAAAGATTATGCTGACTCAATCTGGTGTTTGGAGGAAATGTCAGCTATAGTTGATAATAATAGCCACCTTCGAGGATTAAACAAAGGTATCATCCCAATTTTCTATGATTTGGAGCATTTTAGTGTTAGAATGGACAAGCGACTGCACAGGGATGCTAGGGTTCATCGATGGAAGAATGCATTGATGTCTTTGGCCAATTTGCAAGGTCAATCTGTAAGAAATAAGCCAAAATTTCAAGAGATTGAAAATATCATTAAGATGGTGATGAATAGATTAGGTCATAAATTCTCAAAGTCTAGTGATGGCCTAGTTGGGATACAACCTCGTATAGAATGTTTAGAAAATCTACTAAAATTGCATTCATCAGATGATGAAGATGATTTTCGAGTTCTTGGAATTTGTGGCATGGATGGAATCGGAAAGACAACTTATGCTTCAGTCTTGTATGACACAATCTTTGATCACTTTGATGTTTGTTGTTTCATTGAGAACGTAAGCCAAATTTACAGAGATGGCGACGCCATAGGTTTACAGCAAAAAATTCTTCACCAAATTTCAAATGAAGCAAATTTAGAGATACATAGTCTTTTCGAACTATCTGGTTTCATAAGGAAAAGACTATCTCCAAATCATAAGGTCCTTATAGTGCTTGACAATGTTGACAAACTGGAGCAGTTATTACAAAAATTGGGTATAAGTCCTAAATTGCTTGGAATAGGAAGTAGAATCATCATAACCACCAGAGATGAACATATTCTAAAAGTTTATGGAGCAGATGAAATTCACAAGACAAGCCTTCAAAGACAAATCAAGGAACAGTGGTTTTTTGAAGAACTACGTCCAAATGAGAAAGAAATATTTTTGCATATTGCTTGTTTCTTCCATGGGGAGAGGGAGGAGCATGTAAAGCAGATTCTAGATAGTTGTGAATTATTCTCTAGCATTGGAATTCCTGCCATCTTGAAGAAATCACTCATTACCATTCAAAACAAGGAAATTCATATGCATAAAATGTTACAAGAATTTGGGAGGAAAATGGTTAGAAACAATTATCCAGAAAACCCAGAATCTTGGAATAGATTGTGGCTTTACAAGGATTTTGAAAATGCCTTAACTTCAGAAACGGGAACAAACAATAATGTTAAAGCCATAGTTTTGAGTAATAAAGATGGCATCTCTAATCAGTTGAGAATTAACAGACTGTCAAACATGAAGGAACTGAAATTACTCATATTATATCATGAAAATATTTCTGGAGAACTCAATTTTCTTTCCAACGACTTGCGGTATCTTTTATGGCATGGTTATCCTTTCTCTTCTTTGCCTTTATTTGAACCTTATAGTCGTCTTGTTGAATTGAATTTGCCAAATAGCAGAGTCAAACAACTATGGGAAGGCCACAAGAATTTCCCATATTTGGAAAGGATGAATCTGAGCAACTCAACAGATCTTGAGGAGACGCCAAATTTTGAAGGGAGCCTTAATCTCAAAAGTCTAGATCTTACAGGATGCGAAAAACTAAGCCTAGTGGACCCATCAATTGCACTTCTTACAAAACTTGTTTTCTTGAGTTTGAGTGGTTGTATCAATCTGACCAGGCTCGATTTTGGCAACGGTGATTGTAAGTTGAGTTCTTTGAGAGTTCTACGCCTCTCTGGCTGCACAAAACTTGCAAGTACACCAGATTTTACTGGGCTTTCAAGTCTCAAGTACCTTGATCTTGAAGAAAGTATACATTTGTCAAGCGTTCATGAATCTATTAGTGCTCTTACATCACTCGAGTTCTTGAGTTTGAGAGGTTGCAAGTCTATTGTTGAGATACCTAGCAGCATCAATGATATGACATCTCTTCAAACCCTAGATTTAAACAGTTGTGTAAATCTGAAGAACGTTCCCCTGGGGCAAAAAGTTATTTCCTCCTCCATTCTAGAACGTATGATGTTTCTGGGCCTTCGAAATATACATAGGGTGGTAAGAGGAATTCCTGGTGCTATTGGAGAGTTAAAGTGCCTGGAAGGACTAAATCTACATAGAAGCTATTTTAGTTATGTACATAATATACGTAGAACTGAAAGGCTTCCTCAGTTAGAATATTTAAACTTGATGCGTGACTCTGAATCTAAAAGATCACGTGAACAATGGGGTCCTATTTCAAAACAGTATTCGCATCTTGTAATTATAAGTTAG 3828 0.3874 MESSVESASSTSAGWSWTICLFTLGVFLGTFMPSMFLSWKSSLERKILRGLFGYRSSSFAPACPPLPMEEIAVTNEEPSTSKSIIERKSLLQQNDDYKYDVFLSFIGTDSSKNFTRFLNQSMIGKGISTFKVNKRLDEEAIDPIPPQHILQAIRASRISIVVFSRDYARSTWCLEELATIMDCSKDRLNQVVFPVYYDMERIHVQRQTGAYEDAFLLHSKKFKRQEVDRWRKAMDDLTNWRYWIIKKSSEIKDSESLVQQVLNKLVSKLSRCDSDDLVGNQLPPKVTNKDSHLSMITLISNANMYESPVSIGTDCSLISSSTLPKISSPTAPSLSKYRSHYSSSYSTYTPSYAPTWNISYPSRSSSADDSVRLRPSMGSKVINSNQSGQQNPPLRANNFLSSHVNERTTPASTSRMSKSDSHFSFATSSPRASSVAALPSTFLVAPRFGPLLDNKFSSSNIASASISNQSGKSSSQQRLYKYDVFLSFRGKSTRNNFANHLCNCLIRLGISTFSYDKRGEKEGDCIILPSQVLQAIQDSQISIVILTKDYADSIWCLEEMSAIVDNNSHLRGLNKGIIPIFYDLEHFSVRMDKRLHRDARVHRWKNALMSLANLQGQSVRNKPKFQEIENIIKMVMNRLGHKFSKSSDGLVGIQPRIECLENLLKLHSSDDEDDFRVLGICGMDGIGKTTYASVLYDTIFDHFDVCCFIENVSQIYRDGDAIGLQQKILHQISNEANLEIHSLFELSGFIRKRLSPNHKVLIVLDNVDKLEQLLQKLGISPKLLGIGSRIIITTRDEHILKVYGADEIHKTSLQRQIKEQWFFEELRPNEKEIFLHIACFFHGEREEHVKQILDSCELFSSIGIPAILKKSLITIQNKEIHMHKMLQEFGRKMVRNNYPENPESWNRLWLYKDFENALTSETGTNNNVKAIVLSNKDGISNQLRINRLSNMKELKLLILYHENISGELNFLSNDLRYLLWHGYPFSSLPLFEPYSRLVELNLPNSRVKQLWEGHKNFPYLERMNLSNSTDLEETPNFEGSLNLKSLDLTGCEKLSLVDPSIALLTKLVFLSLSGCINLTRLDFGNGDCKLSSLRVLRLSGCTKLASTPDFTGLSSLKYLDLEESIHLSSVHESISALTSLEFLSLRGCKSIVEIPSSINDMTSLQTLDLNSCVNLKNVPLGQKVISSSILERMMFLGLRNIHRVVRGIPGAIGELKCLEGLNLHRSYFSYVHNIRRTERLPQLEYLNLMRDSESKRSREQWGPISKQYSHLVIIS* 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1173 1275 SMART till_3 98 240 IPR000157 GO:0007165
Amo18g1173 1275 SMART till_3 481 614 IPR000157 GO:0007165
Amo18g1173 1275 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 823 1105 - -
Amo18g1173 1275 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 91 279 - -
Amo18g1173 1275 ProSiteProfiles TIR domain profile. 97 269 IPR000157 GO:0007165
Amo18g1173 1275 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 91 279 IPR044974 GO:0006952
Amo18g1173 1275 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 474 805 - -
Amo18g1173 1275 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1107 1178 IPR044974 GO:0006952
Amo18g1173 1275 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 474 805 IPR044974 GO:0006952
Amo18g1173 1275 Gene3D - 474 641 IPR035897 -
Amo18g1173 1275 MobiDBLite consensus disorder prediction 378 397 - -
Amo18g1173 1275 SUPERFAMILY Toll/Interleukin receptor TIR domain 93 240 IPR035897 -
Amo18g1173 1275 Pfam NB-ARC domain 670 822 IPR002182 GO:0043531
Amo18g1173 1275 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1107 1178 - -
Amo18g1173 1275 ProSiteProfiles TIR domain profile. 480 639 IPR000157 GO:0007165
Amo18g1173 1275 Gene3D - 96 274 IPR035897 -
Amo18g1173 1275 Gene3D Ribonuclease Inhibitor 896 1266 IPR032675 -
Amo18g1173 1275 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 823 1105 IPR044974 GO:0006952
Amo18g1173 1275 SUPERFAMILY Toll/Interleukin receptor TIR domain 473 615 IPR035897 -
Amo18g1173 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 871 IPR027417 -
Amo18g1173 1275 PRINTS Disease resistance protein signature 677 692 - -
Amo18g1173 1275 PRINTS Disease resistance protein signature 754 768 - -
Amo18g1173 1275 PRINTS Disease resistance protein signature 1159 1175 - -
Amo18g1173 1275 SUPERFAMILY L domain-like 945 1249 - -
Amo18g1173 1275 Pfam TIR domain 481 651 IPR000157 GO:0007165
Amo18g1173 1275 Pfam TIR domain 98 272 IPR000157 GO:0007165
Amo18g1173 1275 Gene3D - 644 807 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1173 Amo-Chr18 20242178 20254483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1173 482 1205 WRKY Transcription Factor Family AT4G12020 27.851 1.24e-60 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1173 - - ahf:112771515 1545.79