Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1172 ATGAGCTCAAAATATTCAGGTGACAAAGCGTCGGATGTGGACAGCTGGTTATGGTTAGTTGGTGGTCTGATAGCAGGCATGATTTTGAGTCCATTAATATCAAGCTGGTTACCCACTTGGAAATCCTCACTCAAGAGCATGTTTGAGACTCTGCTGTGTCAGCTGGGCCATCGAGAAAGACCTTCAAGCATGGTCAACGATTCAGCTTCCGCTCATTTTCTGGATTCAAACATCAGCCCCCTGAGCGACGATGAAGATTCATCTTCCTATCAGTCTCTGGATTCAAACATCAGAGAAGGCTTCGGTCTGATCGGGGACGAAGATTCATCTTCCTATCATTCTGCGGATTCAAACATGAGCCAAGTCAGTGCCCTGAGTGACGACGAAGATTCATCTTCCTATCATTCTGTAGATTCAAACATCAGCGAAGTCAGTTCGCTATGCGAGGAAGATATTGCTCCCGTTCAGTTTCAGGATTCAAACAACAGCGAAGAATGCGTGGATTCCCATAAGCAGGTCTACAGATACGATGTGTTCCTAAGCTTCCGTGGTCCTGACGTCCGCAACAATTTTGTTGATCATCTTTTCGAACGTCTCACTAAAAAAGGCATTTTCACATTCAAGGATAATGTAAGGCTCAAGAGAGGAAAACGCGTTAAACCCGAGCTAATGGATGCAATTAGAGATTCACGCCTTGCTATCGTTGTCTTCTCTAGCACATACCCGACCTCAACGTGGTGTCTCGATGAAATGTCCGCTATAGCTGATCTCCATCGACAAGAGAAACAAATTGTTGTCCCAGTTTTCTACGGCATTACTTCTTCTGATGTTGGAAGAGAAGGAGGCCCATACGATGTCCACTTCAATTCAGAGCAATACAGCAAAATTCCCAATAGGGTTGACCGATGGAAGTTTGATGCCAAATATTTGGCCAAAGCGTATGGTTTCCCTATAAACCCTGAGAGACCAGAGACTAAACAGCTGGAAGAGATTATTGCTTTTGTTACAAAGGAATTGAATCATAAATTCACAATAGACATCAGTGATCTGATTGGGATACAGCCCCGTGTGGCAGATCTAGAAAGACGACTCAAGTTGACATCAGAGGATGTTCCCTTTCAAATTCTCGAAATTGTGGGCATGAGCGGGATAGGAAAGACAGTTCTCGCTAAGATCTTGTTCGACAGAATCTCTTATCAATTTGATGCTTGCTGTTTTATTCAGGACGTCAACCACATTCATAAAATGCATGGCAGAGGGGCTACTACTAAGATTCAAAAACAGATTATTCATCAGCTTTTCCAGGAAGAAGATCTACAATTTCTAAGTTCTCCTGAAATAGTCAAGATGCTACAAAATAGGTTATGTAACCCAAATCTCCCCAAAAAGGCTCTTATAGTTCTTGACGATGTTGATGATCCAAACCAATGGCATAAATTGGGAATATTGCCTAACTTTCTTGGTGCAGGAAGCAGAGTTGTCATAACTACTAGATTTGAGCATATTCTTAATGTCAATACTACAGCATATGAAATTTACGAGGCTCCACTGTTGAATGATGATGATGCACTTAAACTCTTTCTAACAAAAGTCTCCAAGAGCGAAGATCCTAGCACTACTGTCAGCGGTGTATCTCATAAGATAATAGAATATGCTCAACGCCTTCCTTCAGCAATTGAAAAACTGGCTTCCTCCTTCCATCCAATAGGTGAAGAGCTCTGGGAAAGAGAATTGGTGAAATGGAGAAAATATCCGAATGAAAGGTTTATGAAGTCTCTTCAGGAAACAAGTTATGACGAACTGAATAGAGATGAGAAGGTGATATTTCTAGATATAGCCTGTTTCTTTGGGGGGAAAAGGAAGAAATATGTGGAGCACATTTTGGGGACTAAAATGTCAGATCCCTACCTTGCGATTCAAGAGATTCGGAGGAAATCACTCATAACAATTAGGAACCATGAAATTCATATGCATCAAATGTTACGAGAATTGGGAAAGAACATTGTTCGGGACAAATATCCAGAAGAGCCAAAATATTGGTCTAGATTGTGGGATGTCGAGGATCTCCAAAAAGTCTTGATGTCCGATATGGAAGCAAACAAAGTTCAAACCATAGTTTTGGATGATGATGTCTCCAAACACGAGGACATGAAGATTGAAGGGTTATCAAATATGAGGGATCTTAGACTGCTTATATTACATCATAAGAGCTCCTCAGAAAACCTCACTTTTCGTTTCAATGAGCTATACTATCTTTTATGGCAGGGTTACTCTTCCACTTCTCTCTCACTATCCATATGGTATAATCTTGTTGAATTAAATCTAATTAATAGCAGAATCCAACAACTATGGGAAGGCAGCCAGGCAATTCCAAATCTAAAAAAGGTGGATTTGAGCAACTCGAAAAATCTTAAAGAGATGCCAAGTTTTGAAGGTTGCCGAGGACTTGTGAGACTAGATCTTTCAGGATGCACAAACCTAACGAAAGTGCATGAATCAATTGGGCTTCTTAAAGAACTTGATTGCTTGAGTTTGCAAGACTGTACCAATCTAGCCCTTCTTGATTTTGGCACTAATTGTCAGTTACGTTCTCTGAGAACTCTACTTCTCTCTGGCTGCACCAAGCTTGAGCACACGCCAGATTTGACAGGGCTTTCAAATCTTAGGTACCTGGATCTTGGGCGATGTACAAATTTGTCCACAGTTCATAAGTCTATTGGGGAGCACACAACACTCAAGTACTTGAGTCTGAGAGGCTGCAAAAATCTTGTTCATCCACCTGACCTTGTCAATGGCAACTCATCCCTCCTAATTCTAGATTTGAGCGGTTGCATGAGGATAACAAACCTTCTCTGCCGCAGACAAAAATTTGCGCCTTCCTCCTGCCTGGAATCTTTGATATTTCTGAGTTCTGACTTCCTTGAGCCAACAAGAACTCTTGATTTTGTTGCAAAGATGAGGTGTTTAGAAAGACCAAACCCGAAGAAACAGGGTTTCAGTTCTGTATTTGACAGGGACTGGCTTTGTTCTAAGCTGACATATTTAAACCTGGCATACTGTCATGAGCTTAGAAGATTTCCTGAGCTATCATTTCATGGCCTTCATGAGATGAAAGGAACTTTAGAACGGTATCCACAACTCTCCATCATAGGTCAAGATTATATATTTTCAGCTTCTACTGTATGA 3186 0.4124 MSSKYSGDKASDVDSWLWLVGGLIAGMILSPLISSWLPTWKSSLKSMFETLLCQLGHRERPSSMVNDSASAHFLDSNISPLSDDEDSSSYQSLDSNIREGFGLIGDEDSSSYHSADSNMSQVSALSDDEDSSSYHSVDSNISEVSSLCEEDIAPVQFQDSNNSEECVDSHKQVYRYDVFLSFRGPDVRNNFVDHLFERLTKKGIFTFKDNVRLKRGKRVKPELMDAIRDSRLAIVVFSSTYPTSTWCLDEMSAIADLHRQEKQIVVPVFYGITSSDVGREGGPYDVHFNSEQYSKIPNRVDRWKFDAKYLAKAYGFPINPERPETKQLEEIIAFVTKELNHKFTIDISDLIGIQPRVADLERRLKLTSEDVPFQILEIVGMSGIGKTVLAKILFDRISYQFDACCFIQDVNHIHKMHGRGATTKIQKQIIHQLFQEEDLQFLSSPEIVKMLQNRLCNPNLPKKALIVLDDVDDPNQWHKLGILPNFLGAGSRVVITTRFEHILNVNTTAYEIYEAPLLNDDDALKLFLTKVSKSEDPSTTVSGVSHKIIEYAQRLPSAIEKLASSFHPIGEELWERELVKWRKYPNERFMKSLQETSYDELNRDEKVIFLDIACFFGGKRKKYVEHILGTKMSDPYLAIQEIRRKSLITIRNHEIHMHQMLRELGKNIVRDKYPEEPKYWSRLWDVEDLQKVLMSDMEANKVQTIVLDDDVSKHEDMKIEGLSNMRDLRLLILHHKSSSENLTFRFNELYYLLWQGYSSTSLSLSIWYNLVELNLINSRIQQLWEGSQAIPNLKKVDLSNSKNLKEMPSFEGCRGLVRLDLSGCTNLTKVHESIGLLKELDCLSLQDCTNLALLDFGTNCQLRSLRTLLLSGCTKLEHTPDLTGLSNLRYLDLGRCTNLSTVHKSIGEHTTLKYLSLRGCKNLVHPPDLVNGNSSLLILDLSGCMRITNLLCRRQKFAPSSCLESLIFLSSDFLEPTRTLDFVAKMRCLERPNPKKQGFSSVFDRDWLCSKLTYLNLAYCHELRRFPELSFHGLHEMKGTLERYPQLSIIGQDYIFSASTV* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1172 1061 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 169 877 - -
Amo18g1172 1061 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 879 923 - -
Amo18g1172 1061 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 879 923 IPR044974 GO:0006952
Amo18g1172 1061 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 169 877 IPR044974 GO:0006952
Amo18g1172 1061 SUPERFAMILY "Winged helix" DNA-binding domain 595 693 IPR036390 -
Amo18g1172 1061 MobiDBLite consensus disorder prediction 110 135 - -
Amo18g1172 1061 Pfam TIR domain 176 340 IPR000157 GO:0007165
Amo18g1172 1061 Gene3D - 342 513 IPR027417 -
Amo18g1172 1061 SUPERFAMILY L domain-like 706 1035 - -
Amo18g1172 1061 Gene3D - 518 607 IPR042197 -
Amo18g1172 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 612 IPR027417 -
Amo18g1172 1061 Gene3D - 173 341 IPR035897 -
Amo18g1172 1061 PRINTS Disease resistance protein signature 375 390 - -
Amo18g1172 1061 PRINTS Disease resistance protein signature 458 472 - -
Amo18g1172 1061 PRINTS Disease resistance protein signature 552 566 - -
Amo18g1172 1061 PRINTS Disease resistance protein signature 788 804 - -
Amo18g1172 1061 Pfam NB-ARC domain 366 564 IPR002182 GO:0043531
Amo18g1172 1061 Gene3D Ribonuclease Inhibitor 701 882 IPR032675 -
Amo18g1172 1061 Gene3D Ribonuclease Inhibitor 883 1048 IPR032675 -
Amo18g1172 1061 ProSiteProfiles TIR domain profile. 174 339 IPR000157 GO:0007165
Amo18g1172 1061 SUPERFAMILY Toll/Interleukin receptor TIR domain 174 310 IPR035897 -
Amo18g1172 1061 SMART till_3 175 313 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1172 Amo-Chr18 20155629 20160718 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1172 176 986 WRKY Transcription Factor Family AT4G12020 27.121 3.12e-59 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1172 - - aip:107614139 2129.75