Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1170 ATGGAGCCAGGCGAGACGCCATCAGTTTCTACTAATGCTAGTTGGTCATGGACGGTGTGCCTTTTCATATCAGGTATAGTTTTTGGTTCATTCATATCAGGCATCTTTCTCAATTTGAGACCCTTACTCAGCAGCAAGTTCCGGGCTCTGCTGGGTTACCAAGATTCAGATTCCAACAACATCAAAGATGAACCGTTGGGCGAGGAAGGCAGCAGGTTGAGCCAGGAAGATTCAGCTTCTCTTCATTCTCTGGATTCAAATGTCAGCCAAGGCAGCTCCCTGAGCCAGCAGGAAGATTCAACTTGCGATCATCCTCCTCCGGAGTCAAAGTCAACTATGACCGAGGGGAGTTCGTCTTCTCCGCGAGGTTATAAATATGATGTGTATCTGAGTTTCAGAGGTGCTGATACCCGCGGAACTTTCATTGATTATCTTTACCACCGGCTCATGGAAGAAGGTATCTTGGCCTTCAAAGACGATGTGAATTTAAACAGAGGAGAAAGCATTTCATCAGAGCTCCTGCAAGCAATTAAAGATTCACGGATTTCTATCGTTGTGTTCTCAAGAGGTTATGCTAGCTCAACTTGGTGTTTGGACGAACTGGTTGCTATAGTTGATTGTTACAAAGAGATGAAGCAGGAACTTTTCCCAGTTTTCTATGATGTAGATCCACGTGATGTTCGATATCAAAGTGGGGCTTACGAGGATGCGTTTGATTCGCATAGGGAGAGATTCAAAGAAGAGCCTGACAAGATCTACAAATGGAAGAGTGCTATGACGTATTTGGCCAATTTAAGTGGTTTTGCTTTAAGAGATCCCGCTGAAGCCGAAGGGATTGAAAGAATAGTTGAGGCCGTGCTGGACACACTGGTTTATAAATTCCAAAGTTCAAGATTTACTCATAAAAATCCAGAATCCACTGAAAGAAGACCATCGTTGCAGGAATTCAACAAATATGACGTGTTTCTCAGTCTCAGACGCACTCACACTCCCTACATATTTATTGACTACCTTTACCATTATCTCACCAAGAAAGGATTTTCCACCTTCAAGAGTGAAGAGGAGACTGAGAGAGGAGACTCCATTCCTTCACAGGACCTCCAGGTAATTAAAGATTCCAGGATTCTTATAGTTGTCTTCACAAGAGATTATGCTGACTCAACTTGCTCTTTGGAGGAAGTGGCTACCATAGTTGATTGTCACTGGGAACTAAATCAAACTGTCATCCCAGTTTTCTGTGATGTGCATCCTAGGGATGTTCGAAGACAAACCGGCCCTTATGAGAAAGCGTTTGTTTCATATACGAAGGAATTCAAACAAGATCCCCTCAAGGTTCAAAAGTGGAGGGAAGCTTTGAATTACTTGACTAATCTACAAGGTGTGAGTCTAAAAGATGGATCAGAGATTGAAGCGATTGGAAATATCATTCAGATAGTGGAACGATTATGCCCTAAATTCTCCAGGCTTAGTAGCCACGGTCCAGTTGGTATACAATCCAGTTTAGCCATGCTAGAAAAGCTTTTGAAATTAGAGGATGATTGTGTTTTAGTTCTCGGAGTTTGGGGCATGGGTGGATCTGGAAAGACAACCCATGCTTTAGCTTTGTATGACAGAATAGTTCAGGAATTTGAGGGTGCTTGTTTTATTCAGGACGTAAGCCAGGTTTACAGAGTTGGTGGTGCTACTGCTTTGCAGAAACAAATCCTCTGTCAATTTTTAGATGAAGAACTTTCAGATATGTACAGTCCTTTTGAAATGTCTGGCTTCTTAAGAAGAAGGCTTTATGGGAAAAAGATCCTTATAGTCCTTGACAATGTTGATGTGCCAAGGCAGTTGGAGTTATTGGCTATAAATCGTAACATGCTTGGGAACGGAAGTAGGATTATCATAACCACCAGGGATAGACATATTTTGACTGCATACGAAGCAGATGTAATTTACGAGATTCCATTATTGAATGAAGATGATGCTCGTGAACTGTTCTTGAGTGCTTGTCCTGATGCTACCAATTATGAGGGCTATACTGAGTTGATTCCCAGAGTACTGGAATATGCTGGTGGTCTTCCATTGGCGATCAGAGTACTGGCTTCTTTTTTGGGATCCTGTGATATAACTGTCTGGAAAGATACCTTGAATAGATTGAGAAAAGTGCCATCTTTTGAAGTTATAAAGATTCTTCAAATAAGTTTTGATGGGTTAGACCAAGAAGAGAAAGAAATATTTTTGCACATTGCTTGTTTCTTTCATGGGAAGAAACTAGATTTTGTAATAGAAGTTCTAAATTGTTGTGGATTTTTCGCTCGAATTGGGATTCAAGCTTTGATGGACAAATCACTCATTATAAAAAATGAGGAGGAAATTCATATGCATGATCTATTGCAAGAAATGGGAAAGGAAATTGTTCGTCAAGAATGTCCAGAAAATCCAGCATCGCGGAGTAGATTGTGGCGTTACGAGGACTTTAGCTTTACCTTGAAGTCAAAGAATGAAGCAAGCAAAGTTAAAGCCATAGTTCTATATGAGGATGCCTCCATCTCCAAACATGAAGATCTGAACATCGAAGGGTTGTCAAAAATGACAAATCTTGAACTGCTCATAGTATATCATCAACATTTTTCGGGAAAGCCTACTTCTCTTCCCAACAAATTACGGTATCTTTTGTGGGATGGATATCCTTCCTCTTCTTTGCCTTCATTTGAACCGTATAACCGTCTTGTTCAATTGAATTTGCCTAACAGCCGCATCAAACGGCTATGGAATGGCAGTCAGGTATTTCGAAGTTTAGAAAGGGTGGATTTGAGTTACTCAAAAGAGCTCAAGGAGACGCCAAATTTTGAAGGGTGCCCAAGTCTTAAGCGGCTAGATCTCACAGGATGCACAAACCTAGTGCAAGTCCATCCATCTATCAGAGATCTTAAAGAACTTGCTTACTTGAGTTTCCGTGACTGTGATAAGTTGGTCACCCTCAATCTTGATCATAAATGCAAATTAAGTTCTTTGAAGGTTCTTGACCTCTATAGTTGCAAAAATCTTAAGAACACACCAGATTTTACAGGACTACCCAATCTTGAGCACATTGATCTTGGAGAATGTACACGTTTATCCACTGTTCATGATTCTATTGGGACTCTTGTAAATCTTACGTACTTAAATGTGCAAGGCTGCATCAAGCTTAAGTTGCCTGATAGCATTGATGTCACATCTCTTCAAACTCCGAAGGTTCATGTCACGGATAGAAAAGAAAAGAAAGATAGTTCAAAGTGA 3264 0.4081 MEPGETPSVSTNASWSWTVCLFISGIVFGSFISGIFLNLRPLLSSKFRALLGYQDSDSNNIKDEPLGEEGSRLSQEDSASLHSLDSNVSQGSSLSQQEDSTCDHPPPESKSTMTEGSSSSPRGYKYDVYLSFRGADTRGTFIDYLYHRLMEEGILAFKDDVNLNRGESISSELLQAIKDSRISIVVFSRGYASSTWCLDELVAIVDCYKEMKQELFPVFYDVDPRDVRYQSGAYEDAFDSHRERFKEEPDKIYKWKSAMTYLANLSGFALRDPAEAEGIERIVEAVLDTLVYKFQSSRFTHKNPESTERRPSLQEFNKYDVFLSLRRTHTPYIFIDYLYHYLTKKGFSTFKSEEETERGDSIPSQDLQVIKDSRILIVVFTRDYADSTCSLEEVATIVDCHWELNQTVIPVFCDVHPRDVRRQTGPYEKAFVSYTKEFKQDPLKVQKWREALNYLTNLQGVSLKDGSEIEAIGNIIQIVERLCPKFSRLSSHGPVGIQSSLAMLEKLLKLEDDCVLVLGVWGMGGSGKTTHALALYDRIVQEFEGACFIQDVSQVYRVGGATALQKQILCQFLDEELSDMYSPFEMSGFLRRRLYGKKILIVLDNVDVPRQLELLAINRNMLGNGSRIIITTRDRHILTAYEADVIYEIPLLNEDDARELFLSACPDATNYEGYTELIPRVLEYAGGLPLAIRVLASFLGSCDITVWKDTLNRLRKVPSFEVIKILQISFDGLDQEEKEIFLHIACFFHGKKLDFVIEVLNCCGFFARIGIQALMDKSLIIKNEEEIHMHDLLQEMGKEIVRQECPENPASRSRLWRYEDFSFTLKSKNEASKVKAIVLYEDASISKHEDLNIEGLSKMTNLELLIVYHQHFSGKPTSLPNKLRYLLWDGYPSSSLPSFEPYNRLVQLNLPNSRIKRLWNGSQVFRSLERVDLSYSKELKETPNFEGCPSLKRLDLTGCTNLVQVHPSIRDLKELAYLSFRDCDKLVTLNLDHKCKLSSLKVLDLYSCKNLKNTPDFTGLPNLEHIDLGECTRLSTVHDSIGTLVNLTYLNVQGCIKLKLPDSIDVTSLQTPKVHVTDRKEKKDSSK* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1170 1087 SMART till_3 318 458 IPR000157 GO:0007165
Amo18g1170 1087 SMART till_3 125 265 IPR000157 GO:0007165
Amo18g1170 1087 SUPERFAMILY "Winged helix" DNA-binding domain 721 824 IPR036390 -
Amo18g1170 1087 ProSiteProfiles TIR domain profile. 317 483 IPR000157 GO:0007165
Amo18g1170 1087 Pfam NB-ARC domain 503 715 IPR002182 GO:0043531
Amo18g1170 1087 Gene3D Ribonuclease Inhibitor 993 1084 IPR032675 -
Amo18g1170 1087 SUPERFAMILY L domain-like 841 1071 - -
Amo18g1170 1087 SUPERFAMILY Toll/Interleukin receptor TIR domain 117 268 IPR035897 -
Amo18g1170 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 744 IPR027417 -
Amo18g1170 1087 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 312 1013 IPR044974 GO:0006952
Amo18g1170 1087 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 118 295 IPR044974 GO:0006952
Amo18g1170 1087 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1011 1072 IPR044974 GO:0006952
Amo18g1170 1087 ProSiteProfiles TIR domain profile. 124 290 IPR000157 GO:0007165
Amo18g1170 1087 Pfam TIR domain 125 298 IPR000157 GO:0007165
Amo18g1170 1087 Pfam TIR domain 318 456 IPR000157 GO:0007165
Amo18g1170 1087 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 312 1013 - -
Amo18g1170 1087 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 118 295 - -
Amo18g1170 1087 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1011 1072 - -
Amo18g1170 1087 MobiDBLite consensus disorder prediction 58 121 - -
Amo18g1170 1087 Gene3D - 316 484 IPR035897 -
Amo18g1170 1087 Gene3D - 123 296 IPR035897 -
Amo18g1170 1087 MobiDBLite consensus disorder prediction 73 121 - -
Amo18g1170 1087 Gene3D - 485 646 IPR027417 -
Amo18g1170 1087 SUPERFAMILY Toll/Interleukin receptor TIR domain 317 460 IPR035897 -
Amo18g1170 1087 Gene3D Ribonuclease Inhibitor 820 992 IPR032675 -
Amo18g1170 1087 Gene3D - 651 734 IPR042197 -
Amo18g1170 1087 PRINTS Disease resistance protein signature 517 532 - -
Amo18g1170 1087 PRINTS Disease resistance protein signature 685 699 - -
Amo18g1170 1087 PRINTS Disease resistance protein signature 995 1011 - -
Amo18g1170 1087 PRINTS Disease resistance protein signature 593 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1170 Amo-Chr18 20127539 20133236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1170 126 290 WRKY Transcription Factor Family AT4G12020 26.506 5.36e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1170 - - aip:107613207 2166.73