Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1167 ATGACAGTTATTGCGCCTACCAAGTTCGTTGACGCCCTACTCTGTTGCCCAAGAAGTTCATCAGCTACAGCAACACCTCCTCCTCCTCCGCAAGATTCAGCTTGCAGTTCCACTCATCAGTCAAACAGGCGAGGGCACCGACACCGGCAACAATTTCACCATCATCTCTATCATAATCTCATCAGGAAAGGAGTTTTCGCCTTCAAGGACAACGAGAGGCTTCAGAAAGGGGAACCTATCTCTGCTCAGCTTCTGCAAGCCATCAGAGATTCCCGTGTTTCTATCATTGTCTTCTCACGTGATTATGCTGCCTCCACATGGTGCCTCGATGAAATGGCTACCATAGCTCAATGCAAGAAAGAGTTCGGACAGACGGTTTTCTCCGTTTTCTATGACGTGGATCCTTCCGATGTTCGAAAGCAGCGCGGGGTGTATGAGGATGCTTTTGCTTTGCATACGGAGCGGTTTCAACAAGATCTTGGCAAGGTTGAACGCTGGAAGAGAGCTATGACGGATTTGGCCAATTCTGCTGGATGGGATGTTAGAGATAAGCCAGAATTCACAGAGATTGATAAAATCATTCAAAAAGTAATAAAAAAATTGGATCATAGATTTTCCGGGTCTGCTGATGATCTTGTAGGGATACAACCATGTGTAAAAGAATTAGAACAAGTTCTAAAGATAAACCCAAAGGATGAAGATGTTAGAGTTCTTGGAATCTGGGGAATGGGCGGAATAGGAAAGACAAGTCTTGCCAGTGTCTTGTATGACAAAATCTCTTATATGTTTGACGCACATTGCTTTATCGAGGATGTGCACAGAAGTTATAGAGATGGCAGTGCTATTGCCGTTCAAAGACAGATTCTTCGTCGAACTCTAGATGAACAAGATCTGGAAAAATATAGTCCTTCTGAAATAGCTGGCATAATCAGAAATAGGCTATCTTCCAAAGAGGTCCTTATAGTTCTTGATAATGTTAATGAAATGGAACAATTAGAACAATTGGCTATTAATCCTAAATTACTTGGAAGAGGAAGCAGAATGATCATAACCACTAGGGATGAACATATTCTTAAAAGTTATGGAGTAGATGCAATTCACAAGGTTTCGTTATTGAATTCCCATGATGCGTCGGATCTTTTTTTAAGAAAGGCCTTCAAAAGTGACCGTCCTAGTAGCAGCACTTGCATGGAGTTGACTCCTAGTATATTGGAATATGCTCAAGGTCTTCCATTAGCAATCAAAGTAGTGGGTTCTTTCTTGTACAATAGGAATGCTTCCCAATGGAGAGATTATTTTGAAAGACTGAAGAAACATCCAGACAAAAAAGTTACTGATGTGCTTCAAATAAGTTTTGACACACTGCAAAAAGAAGACAAAGAAATATTTTTGCACATTGCTTGCTTTTTCATAGGGCAGAGGGAAGAGTATGTAAAGCGAATTCTAGATGTTTGTGGACTACACCCTCACATTGGAATTCAAGTTCTAAAGGAGAGATCACTCATAACTATTAAGAACCAAGAGTTTCATATGCATGACATGTTTCAAGAATTGGGGAAGAAACTTGTTCGAGAAAGATATCCTGAAGAGCCAGCATTATGGAGCAGAGTATGGCTCTATAGCGATTTTGAAAGTGCTTTGATGTCAGCTGAGACGATTTCTATGTCTTCCTCTTATCTAGGATGTTTGATATCTCTGGACCTTGGCTCATGCAATTTAATAGAAACTATTCCTGATTCTATTGGTGATTTGAGTTGCTTAGAAAGATTAAACTTGGAGGGAACTGTCCTAAGACGTCTACCTGGTACCATCAAGAAGCTTTCGAGGCTGGCATACTTGAATTTGGCATGTTGCGATTATCTTCAAGGATTACATGAGCTCCCATTTGATAGTGCACCATCAGGGGGAAGGTATTTTCAAACGGTATCTGCATCTCGTAACCATAGGTCAGGATTGTATGTTGTAAACAAATACAATATGCTTAGGATGAAATTATTTGATTGCATGCTGGCTGCTCTCTCATGGTTTGCAAGACTTGTTGAGCAGCAACCTTGTCATTTCCGATGTGGGTTTGACATCATTATTCCTGGAAATAAGAGTGGTGGAATTCCAGGATGGTATTTCAATCATCAGTTTAAAGCTGGGTCAGCTGTAAGGGTAGTGGATTACGATGATCCAGATGACAACTGGCTTGGCGTTTCATTTTATGTTACATCTCAGCGTGTTCTAGATAATTGTACTCCACCTGGACAGCTATGGCAAGAATATTTTGATATGCCTTCTATAGTCGAATACCATCTGGATTCTGTACCTGGGGTAACACATCCTTGGATAATCTATGTCTCTCGGGTGCATTGCCATTTTGTGAAAACTGGAGCCCGTATAAGATTTAAAGCCTGCCAGGGATTGAAGTTGCAGAAATGGGGGTTTCGCATGGTGTTCAAACAAGATATAGAGGAACTGAAGAGGAGGTTAAAAAGTAAGGATATTAAAAAGCACAGTCCTATCTTTGATTCTTCCAGATTGGTCATTGAGACTGAGTATGTTGATGAAGACCCAAGTAGCAGTTCAGAGTCGAAGATCATGCTTCCTTATAATTGGTTGGTTACCGACGAAGAAGAAAATGAGAAGATGGAGGCAAAGGTAATTATTCCTTCAACTATTCAAATTTTATTGCTTAGCTTGCTGCGTCCGTCTTCTGATCTGCCTAATTATCACGAGGAGTTGAGTGCAACCAATGTCCTCATTAAGTTCAATCCTCTAACTACAAATAATGATACAGTAGTTAATAACTGGGAAGGTTACTTGGAGAGATGGAGAAAATATCCAAATGAAGGATATATGAACTCGCTGCAGGAAACAAGTTATACAGATCTGAAGGGAGATGAGAAGATAATATTTCTAGATATAGCTTGTTTCTTTGGGGGGAAAAGGAACAAGTATGTCGAGCACATTCTAGAGAGTAGAATATCATCAGATCCTCATCTTGCAATTCAAGAGATCTGGAGGAATTCACTCATAAAGATTAGGAACGACGAAATTCATATGCATCAAATATTACGAGATTTGGGCAAGAAAATTGTTCGGGGCAATAATACAGAAGAGCCAAAATGCTGGTCTAGATTGTGGGATGCCAAGGATTTCCAGAAAGCCTTGAACACAGACATGAAAGGAAACGCAGTCCAGGCCATAGTTTTGGATGAAGATGTCTCAAGGTTTTTCAAGATTGAGAGAGTGTCGCAAATGAGGCATCTTAGACTGCTGATATTACATCAGGAGAGCCCCTCAGGAAACCACATTTTTTATTTCAACGAGTTATCCTATCTTTCCTGGGATGGTTACGCTTACGCTTCTCTGTCACTATCCATATGGTTTAATCTTGTTGAATTGAATTTACTAAACAGCAGCATCGAACGACTATGGGATGAAGAAGAGGAAATTCCAAATCTAAAAAGAATGGATCTGAGCAACTCAAGAAATCTTACAACCACTCCAAACTTTGTACGCTGCCAAGGACTTGTGCGGCTGGATCTTAGTGGATGCACAAACCTAACTGAAGTCCACGACTCAATTCAACTTCTCAGCAAACTTGATTACTTGAGTTTGCGAAATTGTAGCAGTCTACCCATTCCTGATTTTGGCTCTAATTGTCAGTTAGTTTCTCTAAGAACTCTGCTGCTCTCTGGCTGCAACTTCAGGCACAGGAGGCCAGATCTGACAAGGCTTTCAAAACTTAGCTACATTGATTTTTAA 3753 0.405 MTVIAPTKFVDALLCCPRSSSATATPPPPPQDSACSSTHQSNRRGHRHRQQFHHHLYHNLIRKGVFAFKDNERLQKGEPISAQLLQAIRDSRVSIIVFSRDYAASTWCLDEMATIAQCKKEFGQTVFSVFYDVDPSDVRKQRGVYEDAFALHTERFQQDLGKVERWKRAMTDLANSAGWDVRDKPEFTEIDKIIQKVIKKLDHRFSGSADDLVGIQPCVKELEQVLKINPKDEDVRVLGIWGMGGIGKTSLASVLYDKISYMFDAHCFIEDVHRSYRDGSAIAVQRQILRRTLDEQDLEKYSPSEIAGIIRNRLSSKEVLIVLDNVNEMEQLEQLAINPKLLGRGSRMIITTRDEHILKSYGVDAIHKVSLLNSHDASDLFLRKAFKSDRPSSSTCMELTPSILEYAQGLPLAIKVVGSFLYNRNASQWRDYFERLKKHPDKKVTDVLQISFDTLQKEDKEIFLHIACFFIGQREEYVKRILDVCGLHPHIGIQVLKERSLITIKNQEFHMHDMFQELGKKLVRERYPEEPALWSRVWLYSDFESALMSAETISMSSSYLGCLISLDLGSCNLIETIPDSIGDLSCLERLNLEGTVLRRLPGTIKKLSRLAYLNLACCDYLQGLHELPFDSAPSGGRYFQTVSASRNHRSGLYVVNKYNMLRMKLFDCMLAALSWFARLVEQQPCHFRCGFDIIIPGNKSGGIPGWYFNHQFKAGSAVRVVDYDDPDDNWLGVSFYVTSQRVLDNCTPPGQLWQEYFDMPSIVEYHLDSVPGVTHPWIIYVSRVHCHFVKTGARIRFKACQGLKLQKWGFRMVFKQDIEELKRRLKSKDIKKHSPIFDSSRLVIETEYVDEDPSSSSESKIMLPYNWLVTDEEENEKMEAKVIIPSTIQILLLSLLRPSSDLPNYHEELSATNVLIKFNPLTTNNDTVVNNWEGYLERWRKYPNEGYMNSLQETSYTDLKGDEKIIFLDIACFFGGKRNKYVEHILESRISSDPHLAIQEIWRNSLIKIRNDEIHMHQILRDLGKKIVRGNNTEEPKCWSRLWDAKDFQKALNTDMKGNAVQAIVLDEDVSRFFKIERVSQMRHLRLLILHQESPSGNHIFYFNELSYLSWDGYAYASLSLSIWFNLVELNLLNSSIERLWDEEEEIPNLKRMDLSNSRNLTTTPNFVRCQGLVRLDLSGCTNLTEVHDSIQLLSKLDYLSLRNCSSLPIPDFGSNCQLVSLRTLLLSGCNFRHRRPDLTRLSKLSYIDF* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1167 1250 SUPERFAMILY L domain-like 553 673 - -
Amo18g1167 1250 Gene3D - 189 366 IPR027417 -
Amo18g1167 1250 SUPERFAMILY L domain-like 1064 1249 - -
Amo18g1167 1250 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 930 1148 - -
Amo18g1167 1250 SUPERFAMILY Toll/Interleukin receptor TIR domain 47 179 IPR035897 -
Amo18g1167 1250 MobiDBLite consensus disorder prediction 20 49 - -
Amo18g1167 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Amo18g1167 1250 PRINTS Disease resistance protein signature 237 252 - -
Amo18g1167 1250 PRINTS Disease resistance protein signature 407 421 - -
Amo18g1167 1250 PRINTS Disease resistance protein signature 313 327 - -
Amo18g1167 1250 PRINTS Disease resistance protein signature 605 621 - -
Amo18g1167 1250 ProSiteProfiles TIR domain profile. 30 201 IPR000157 GO:0007165
Amo18g1167 1250 Gene3D Ribonuclease Inhibitor 542 670 IPR032675 -
Amo18g1167 1250 Gene3D - 371 456 IPR042197 -
Amo18g1167 1250 Gene3D - 43 174 IPR035897 -
Amo18g1167 1250 SMART till_3 46 176 IPR000157 GO:0007165
Amo18g1167 1250 Gene3D Ribonuclease Inhibitor 1032 1250 IPR032675 -
Amo18g1167 1250 Pfam NB-ARC domain 223 442 IPR002182 GO:0043531
Amo18g1167 1250 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 550 IPR044974 GO:0006952
Amo18g1167 1250 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 930 1148 IPR044974 GO:0006952
Amo18g1167 1250 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 561 626 IPR044974 GO:0006952
Amo18g1167 1250 SUPERFAMILY "Winged helix" DNA-binding domain 442 541 IPR036390 -
Amo18g1167 1250 Pfam TIR domain 42 205 IPR000157 GO:0007165
Amo18g1167 1250 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 42 550 - -
Amo18g1167 1250 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 561 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1167 Amo-Chr18 20095039 20102844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1167 213 538 WRKY Transcription Factor Family AT5G45050 34.743 2.37e-50 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1167 - - adu:110274842 879.782