Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1163 ATGAATACTTTGGTTGTTCTTTTTTGTAGGTCATTGGAAAATGATGGAAGATTGGGCATTCAGAGAAGAGAAGTAGCTAGGTTCCGCCACCGCAACCTGCTTCTGCCGCCGCCGCCCCCTGCTTCTGTTCTTCTTAGAGGCCCTAAGAATGCCCGAGAGGCTGTCAAGCACTTTGGACCAGCACCTGGTGTGCCCCATAGTCACACCAAGCCCTACGTTCGTTCAAAAGGATGGAAATTTGAGCGTGCTAGAGGAAGAAGGAATAGCAAAGGCTTCAGATTTTCCTTCCCTCAAAGGGGAAAAAGGATTAGAACTCCTCAACAATTTTGGTTTATCACTACTGTTCTAATGAACTCTATGAAAGGATTAATGAGTAGAAATTCTTCATTTGTTCATGATCGTTAA 405 0.4444 MNTLVVLFCRSLENDGRLGIQRREVARFRHRNLLLPPPPPASVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGWKFERARGRRNSKGFRFSFPQRGKRIRTPQQFWFITTVLMNSMKGLMSRNSSFVHDR* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1163 134 Pfam Ribosomal protein 60S L18 and 50S L18e 41 93 IPR021131 -
Amo18g1163 134 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 40 93 - -
Amo18g1163 134 Gene3D - 23 94 - -
Amo18g1163 134 PANTHER 60S RIBOSOMAL PROTEIN L18 40 93 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1163 Amo-Chr18 20015535 20017434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1163 42 93 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 80.769 1.11e-26 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1163 K02883 - cpap:110808129 107.457