Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1161 AGAAGAGAAGCAGTTAGAGTTTTCATCCAACTGCAATCCCTGCCATTCTCATCCCCTTCCTTTGCTGCAAATTTTCGCGACCTGTTTCTGCCGACGCGCCACGCCTCCCCACGCCTCCCACGCTCAATAAGACAAGAGGTTTCTGCGGCCCTAAATCGCTCAACTGGTTCATCAGGAACACGTGACCATGATTCACCAGATGATAAATCCAAATGGGAATGCGTGAGGAAAGGGGTTTGCTGCATTTGCTGCGAAAGCAATATTGATTCTCTCTTGTACAGATGTGGGCACATGTGCACATGTTCTAACTGTGCTAATGATTTGCACCGAAGTGGAAGGAAGTGTCCAATGTGTCAAGCACCAGTTGTTGAAGTAATTCGTGCTTATTCCATACTATAG 399 0.4712 RREAVRVFIQLQSLPFSSPSFAANFRDLFLPTRHASPRLPRSIRQEVSAALNRSTGSSGTRDHDSPDDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSNCANDLHRSGRKCPMCQAPVVEVIRAYSIL* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1161 132 ProSiteProfiles Zinc finger RING-type profile. 80 119 IPR001841 -
Amo18g1161 132 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 39 131 - -
Amo18g1161 132 PANTHER PROTEIN, PUTATIVE-RELATED 39 131 - -
Amo18g1161 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 130 IPR013083 -
Amo18g1161 132 MobiDBLite consensus disorder prediction 49 70 - -
Amo18g1161 132 SUPERFAMILY RING/U-box 79 125 - -
Amo18g1161 132 Pfam Zinc finger, C3HC4 type (RING finger) 78 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1161 Amo-Chr18 20011880 20012517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1161 80 127 C3H Transcription Factor Family AT3G06140 37.500 3.18e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1161 - - ahf:112769613 279.641