Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1146 GTTGATCATCTTTTCGAACGTCTCACTAGAAAAGGCATTTTCACATTCAAGGATAATGTAAGGCTCAAGAGAGGAAAACGCGTTAAACCCGAGCTAATGGATGCAATTAGAGATTCACGCCTTGCTATCGTTGTCTTCTCTAGCACATACCCGACCTCAACGTGGTGTCTCGATGAAATGTCCGCTATAGCTGATCTCCATCGACAAAAGAAACAAATTGTTGTCCCAGTTTTCTGCGGCATTACTTCTTCTGATGTTGGAAGACGAGGAGGCCCATACGATGTCCACTTCAATTCAGAGCAATACAGCAAAATTCCCAATAGGGTTGACCGATGGAAGTTTGATGCCAAATATTTAGCCAAAGTGTATGGTTTCCCTATAAACCCTGAGAGGTATGAAGCAAACAAAGTTCAAACCATAGTTTTGGATGATGATAGAGGTAAAGCACTCTTCACGCGATTCATTCCTAACTTACTTGGGTCGGGAAGCAGAGTTGTCATAACTACTAGATTTGAGCATATTCTTAATGTGAATGCACCGTATGAAATTCACGAGGTTCAACTATTGAATGATGATGAAGCTCTTGAACTTTTTCAAAGAACAGCCTTCAAAATTGATTGTCATAGTCCCGCTATCAGTGATGTATCTGGTAAGATAATAGAATATGCTCAATATCTTCCTTCAGCAATTGTAAAACTGGGTAACTACTTCAATCAAAATGCTGAAGAGCTTTGGGAAAGATGCTTCCAGAGATGGAGAGAATATCCGGAAGAAAAATATATGAATTCTCTGCAGGAAAAAAATTACCAATTTCTGAATGAAGATGAGAAGATGATCTTTCTAGATATAGCCTGTTTCCTTGCGGGAAAAAGGAAGAAGTATGTGGAGCACATTCTAGCGAGTAGAATATCAGATCCTTACCTCGCAATTCAAGGGATCCGGAAGAAATCACTCTCCATTCTTTCTTCACAGGCAATTCCAACCCTAAAAAGGATGAATCTGAGGAACTCGAGAAATCTTATAATCACTCCTAACTTTGCATGCTGCCGAGGACTTGTGCGGCTGGATCTTACAAGATGCACAAACCTAACTGAAGTCCATGACTCAATTGGACTTCTGAGAAAACTTGATTACTTGAGTTTGCGAGAATGTAGCAGTCTAGCCTTTCTTGATTTCGGTACTAATTGCCAGTTAAGTTCTCTAAGAACTCTACTGCTCTCTGGCTGCACCAACCTTAAGCGAACACCAGATTTCACAGTGCTTTCAAATCTTAGGTTCCTTGATCTTGAGCGATGTACAAGTTTGTCCAAAGTACACGAGTCTATTGCTGCTCTTGCAAGGCTTAAGTACTTGAGCCTGAGAGGCTGCAAAAATCTTGTTCATGCACCTTACATTCTCAATGGCAGCTCGTCCCTCCTAATTCTTGATTTGAGCGGTTGCATGATGATAACCAACCTTCCCGGCCGCAAAAGAAAATTTGTGCATTCCTCTTGTTTAAAATCTTTCATATTTCTGAGTCCTGACTTCCTTGAGCCAAGAACTTTTGATTTTTTTGGAGAGTTGATGTTTCTCGAAGGGCTAAATCCCGAGAAACAGAATTTTAATTCTGTATTAGATTGGAAGTGGCTTTGTTCTAAGCTAACATATTTAAACTTGGCACACTGTCATGAGCTTACAAGATTTCCCGAGGTTTCATCTCGTGGTCTTCATCAACGGCATCCGCAACTCTCAATGGTTCAAGATTATCTATTTTCAGTTTCTACTGTGGGAATGGCACTTGATGGAAGAGGTAAAACAGAATAG 1803 0.4043 VDHLFERLTRKGIFTFKDNVRLKRGKRVKPELMDAIRDSRLAIVVFSSTYPTSTWCLDEMSAIADLHRQKKQIVVPVFCGITSSDVGRRGGPYDVHFNSEQYSKIPNRVDRWKFDAKYLAKVYGFPINPERYEANKVQTIVLDDDRGKALFTRFIPNLLGSGSRVVITTRFEHILNVNAPYEIHEVQLLNDDEALELFQRTAFKIDCHSPAISDVSGKIIEYAQYLPSAIVKLGNYFNQNAEELWERCFQRWREYPEEKYMNSLQEKNYQFLNEDEKMIFLDIACFLAGKRKKYVEHILASRISDPYLAIQGIRKKSLSILSSQAIPTLKRMNLRNSRNLIITPNFACCRGLVRLDLTRCTNLTEVHDSIGLLRKLDYLSLRECSSLAFLDFGTNCQLSSLRTLLLSGCTNLKRTPDFTVLSNLRFLDLERCTSLSKVHESIAALARLKYLSLRGCKNLVHAPYILNGSSSLLILDLSGCMMITNLPGRKRKFVHSSCLKSFIFLSPDFLEPRTFDFFGELMFLEGLNPEKQNFNSVLDWKWLCSKLTYLNLAHCHELTRFPEVSSRGLHQRHPQLSMVQDYLFSVSTVGMALDGRGKTE* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1146 600 ProSiteProfiles TIR domain profile. 1 159 IPR000157 GO:0007165
Amo18g1146 600 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 141 IPR044974 GO:0006952
Amo18g1146 600 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 328 413 IPR044974 GO:0006952
Amo18g1146 600 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 140 291 IPR044974 GO:0006952
Amo18g1146 600 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 404 492 IPR044974 GO:0006952
Amo18g1146 600 SMART LRR_CC_2 544 572 IPR006553 -
Amo18g1146 600 SMART LRR_CC_2 349 378 IPR006553 -
Amo18g1146 600 SMART LRR_CC_2 421 448 IPR006553 -
Amo18g1146 600 PANTHER TMV RESISTANCE PROTEIN N-LIKE ISOFORM X1 140 291 - -
Amo18g1146 600 PANTHER TMV RESISTANCE PROTEIN N-LIKE ISOFORM X1 404 492 - -
Amo18g1146 600 Pfam TIR domain 2 115 IPR000157 GO:0007165
Amo18g1146 600 Gene3D - 1 146 IPR035897 -
Amo18g1146 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 283 IPR027417 -
Amo18g1146 600 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 114 IPR035897 -
Amo18g1146 600 PANTHER TMV RESISTANCE PROTEIN N-LIKE ISOFORM X1 1 141 - -
Amo18g1146 600 Pfam NB-ARC domain 160 255 IPR002182 GO:0043531
Amo18g1146 600 PANTHER TMV RESISTANCE PROTEIN N-LIKE ISOFORM X1 328 413 - -
Amo18g1146 600 Gene3D - 189 278 IPR042197 -
Amo18g1146 600 SMART till_3 1 122 IPR000157 GO:0007165
Amo18g1146 600 Gene3D Ribonuclease Inhibitor 415 588 IPR032675 -
Amo18g1146 600 SUPERFAMILY L domain-like 315 568 - -
Amo18g1146 600 Gene3D Ribonuclease Inhibitor 307 414 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1146 Amo-Chr18 19793740 19802349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1146 135 326 WRKY Transcription Factor Family AT5G45050 31.282 2.50e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1146 - - ahf:112705314 549.666