Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1108 ATGGCCTCCATTCCGTTGGGGCCGCACCACCACCAACAACCGCCGGAGCAGCTGCAGTCGCAACCTGACAACAACGCGCCGAAGCTTCCAGCTCGGCGCGGCTCCGACGTGGATGCCGATAAGGAAATGTCAGCCACAGTAATTGAAGGGAATGGTGAAGTTACTGGCCACATAATCTCAACCACAATTGGTGGCAAAAATGGTGAACCTAAACAGACCATCAGTTACATGGCTGAGCGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAATGCTTGGAGACTGGGGAGGCGGTGGCTATAAAGAAAGTTTTGCAGGACAGGCGGTACAAAAATCGTGAATTGCAAYTGATGCGCTTGATGGATCATCCTAATGTAATTTCCCTGAAGCACTGTTTYTTCTCTACAACAAGCAAAGATGAACTTTTCCTGAACTTRGTAATGGAATATGTCCCTGAGACRATGTACCGGGTTCTAAAGCACTACAGCAGTATGAACCAGAGAATGCCCTTAATTTATGTGAAATTATATACATATCAAATCTTCAGGGGACTAGCATATATCCATACCGTACCTCGAGTTTGCCATAGGGATGTGAAGCCCCAAAATCTTTTGGTTGATCCTCTTACTCATCAAGTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTCAAGGGTGAATCCAATATTTCGTACATATGTTCACGTTACTATCGGGCCCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGACATCTGGTCAGCTGGTTGTGTCCTTGCTGAACTTCTTCTAGGCCAGCCATTATTTCCGGGAGAAAATCAAGTGGACCAACTTGTGGAAATTATCAAGGTTCTTGGTACTCCAACCCGAGAAGAAATTCGTTGCATGAACTCTAATTATACAGATTTTAGGTTCCCCCAGATTAAAGCTCATCCTTGGCATAAGATTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAGTCTTCGTTGTTCCGCCCTGGAAGCTTGTGCACATCCATTCTTTGATGAGCTTCGTGAGCCAAATGCTCGACTACCTAATGGCCGTCCACTGCCACCACTTTTCAACTTTAAACAGGAATTAGCCGGAGCGTCCCCCGAGTTGATCAACAGACTCATCCCAGAGCATGTAAGGAGGCAAGGTGGCCTTGGCCTCCCCCATCCAAGTAGCACACAAATCTAG 1257 0.4566 MASIPLGPHHHQQPPEQLQSQPDNNAPKLPARRGSDVDADKEMSATVIEGNGEVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPRVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNSNYTDFRFPQIKAHPWHKIFHKRMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGASPELINRLIPEHVRRQGGLGLPHPSSTQI* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1108 418 CDD STKc_GSK3 71 363 IPR039192 -
Amo18g1108 418 PANTHER OS02G0236200 PROTEIN 31 407 - -
Amo18g1108 418 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
Amo18g1108 418 SUPERFAMILY Protein kinase-like (PK-like) 75 384 IPR011009 -
Amo18g1108 418 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 31 407 - -
Amo18g1108 418 Gene3D Phosphorylase Kinase; domain 1 61 155 - -
Amo18g1108 418 Gene3D Transferase(Phosphotransferase) domain 1 156 403 - -
Amo18g1108 418 SMART serkin_6 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1108 418 ProSiteProfiles Protein kinase domain profile. 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1108 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Amo18g1108 418 Pfam Protein kinase domain 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1108 418 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1108 Amo-Chr18 19161890 19166552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1108 80 398 MAP Kinase Gene Family AT3G59790 35.629 9.45e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Amo18g1108 Pkinase 4.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1108 K14502 - qsu:111995841 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1108 18 19161890 19166552 Amo18g1108 18 19161890 19166552 ECH