Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1106 ATGGATGATGATGATGGGTACAGACGGAAGGCGAAGATCGCAGTGGTGGCTATGGTGGTTCTGGCTTCTATAGCAGTCTTTGCTCTCTTTGTTGCATTTGCTTACTACTGCTACATTCGCCGCAAGGTCTCCATGCGCCGCCAGGCCCAAAAAGCTGAAGATGCTAACCTTTATGAGAAAAGTGACTTTGCAAATTTGCAAGTTGTTGCTGAGAAGGGACTTAAGGTGTTCACATTCAAGCAGCTACATTCTGCAACAGGTGGCTTTAGCAAGTCCAATGTGATTGGCCATGGTGGTTTTGGCCTTGTTTACCGCGGAGTGCTTAGTGATGGCAGGAAAGCYGCCATTAAATTCATGGATCAGGCTGGAAAGCAGGGGGAAGAAGAATTTAAAGTAGAGGTGGAGTTGCTTAGCCGGTTGCATTCTCCGTATTTGCTGGCATTGCTYGGGTACTGCTCTGATAATAATCATAAACTTCTGGTATATGAGTTCATGGCGAATGGTGGTCTGCAGGAACATCTTTATCCTGTCAGCAATTCTAATGTTATGCCTGTGCAATTGGATTGGGAAACTCGATTAAGCATAGCACTTGAAGCTGCTAAGGGCTTGGAATATCTTCATGAACATGTCAGTCCCCCAGTGATTCACAGAGATTTCAAGAGCAGCAATATCCTCTTGGACAAAAAATTCCATGCAAAAGTTTCTGATTTTGGATTGGCCAAGCTTGGACCTGATAGAGCCGGTGGACATGTTTCAACTCGTGTTTTAGGCACCCAAGGATATGTTGCTCCCGAATATGCACTAACAGGGCATTTAACAACAAAATCAGATGTGTACAGTTATGGTGTTGTACTTTTGGAGCTGCTTACTGGCCGCGTGCCTGTCGATATGAAGAGACCTCCAGGAGAAGGCGTTCTTGTTTCTTGGGCTTTACCCCTTTTAACCGATAGAGAAAAGGTTGTGAAGATTATGGATCCTGCATTGGAAGGACAGTACTCAATGAAAGAAGTGATCCAGGTAGCAGCAATTGCTGCAATGTGTGTGCAACCGGAAGCAGATTACCGGCCGCTGATGGCGGATGTGGTGCAGTCATTGGTTCCTCTGGTTAAGACTCAGAGGTCCACCTCAAGGGTAGGTACGTGCTCTAGTTTCCATTCTCCTAAGTTGTCCCCTGGCTCAATATCCTGTTAA 1191 0.4584 MDDDDGYRRKAKIAVVAMVVLASIAVFALFVAFAYYCYIRRKVSMRRQAQKAEDANLYEKSDFANLQVVAEKGLKVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLSDGRKAAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPVSNSNVMPVQLDWETRLSIALEAAKGLEYLHEHVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDREKVVKIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSTSRVGTCSSFHSPKLSPGSISC* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1106 396 PANTHER OS01G0750732 PROTEIN 3 388 - -
Amo18g1106 396 ProSitePatterns Protein kinases ATP-binding region signature. 95 117 IPR017441 GO:0005524
Amo18g1106 396 SUPERFAMILY Protein kinase-like (PK-like) 71 365 IPR011009 -
Amo18g1106 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Amo18g1106 396 Gene3D Transferase(Phosphotransferase) domain 1 165 383 - -
Amo18g1106 396 PANTHER OS07G0227300 PROTEIN 3 388 - -
Amo18g1106 396 ProSiteProfiles Protein kinase domain profile. 89 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1106 396 CDD STKc_IRAK 95 368 - -
Amo18g1106 396 Pfam Protein kinase domain 90 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1106 396 Gene3D Phosphorylase Kinase; domain 1 48 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1106 Amo-Chr18 19131823 19134901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1106 1 393 Receptor kinase-like Gene Family AT3G58690 76.845 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Amo18g1106 Pkinase 8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1106 - - gmx:100804893 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1106 18 19131823 19134901 Amo18g1106 18 19131823 19134901 ECH