Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1105 ATGTCGGGAGTGGGACCTATCTCGCAGGACTGGGAGCCGGTGGTAATTCGCAAGAAGGCTCCCACCGCCGCTGCCAAGAAGGACGAGAAGGCCGTCAACGCCGCCCGCCGCGCCGGCGCCGATATCGAAACCGTCAAGAAGTATAATGCTGGGACAAACAGAGCTGCATCTAGTAGCACGTCATTGAACACCAAGAGGCTTGATGATGATACAGAGAATCTAGCTCATGAACGTGTGCCGACTGAACTCAAGAAGGCTCTCATGCAAGCAAGGATGGACAAGAAACTCACTCAAGCACAGCTTGCTCAGATTATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGAAAAGCAATTCCAAACCAGCAGATAATTGGCAAGTTGGAGAGGGCCCTTGGTGCCAAACTGCGAGGCAAGAAATAA 429 0.5221 MSGVGPISQDWEPVVIRKKAPTAAAKKDEKAVNAARRAGADIETVKKYNAGTNRAASSSTSLNTKRLDDDTENLAHERVPTELKKALMQARMDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1105 142 Gene3D - 71 142 IPR010982 GO:0003677
Amo18g1105 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Amo18g1105 142 MobiDBLite consensus disorder prediction 52 74 - -
Amo18g1105 142 CDD HTH_XRE 85 135 IPR001387 -
Amo18g1105 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Amo18g1105 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Amo18g1105 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Amo18g1105 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Amo18g1105 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Amo18g1105 142 SMART mbf_short4 86 141 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1105 Amo-Chr18 19124076 19126477 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Amo18g1105 MBF1 2.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1105 K03627 - gmx:100500420 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1105 18 19124076 19126477 Amo18g1105 18 19124076 19126477 ECH