Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1101 ATGGGTGAGAGAATTAGTGAAGGCAAAGAAGGGTCTTGTTGTCTAATTACTAGTCCTAATAATGGGAGTAGAAAACGTTCATTCATAGACTTGAATGAAGAAGCTGGTGATGATGAGAACAGAAGCAATAAGAATGATAATGAGATATGTTCATCTTCATGGCAAGAAGGGAATTTGAGTAGCAGCAACAACAACAACGCCACATCATCAAGCGAAGAAGAAGAAGAAGAAGATGATAAGAATAATAATAATAAAGGAAGAAGAACAAGTATGGTTAGACAATATGTGAGGTCAAAGATGCCAAGGCTTCGTTGGACTCCTGATCTCCATCTTGCTTTTGTTCAAGCTGTTAATCGCCTTGGTGGACAAGAAAGAGCAACACCAAAGTTGGTTCTTCAGTTGATGAATGTGAGAGGTCTTAGCATTGCACATGTAAAGAGTCATTTGCAGATGTATCGAAGTAAGAAGCTTGATGAGTCTGGTCAAGTTTTATCCCAAAGTAGGGCAATGCAACAAGGAAGGCATCAAATTTTGGAGATGTACCAAAGATTAAATGTACAAGCACACTTTGGGGTTGATAACATTATTAACAGGAGTAGTAGTTATGTACCATCATCATCTCTCCCCATTAAACAACAACCATATAACATTAAACCTCATCATCATGCCTCTTCAAGATTTCATCCAACTGGGATTTTCAATAGTCACATGATGACAAGATCAAGTTCATTGGAGGACAAAGATTCAAGGTTATATGAAGCAAGCTCACATCTACTTGATGTAAGGGATGCAATAATAAGAAGAAATAATAGTAGTAATAGTAATGGAGCTTTTAGGTCTTGCCAAATACTTGAACAAGTGAAGTGGCCTCCTCCTCCTCCTAGAGGAACCTTAAAGGATAAGAATGATAATGGATCACAAGAAAGTGAGAAACATGAAACTTTAGTAGCCATTTCAATGGATGACAACAATACTAGATTTGGTGCACAACCTTCATCACAACAATGGAGCACTACTACCTTGGCTGATTATCAATGTCATCATCATCAAAGAAGTTCTTTCAGTGTTGCCTTCCCTGCTGGCCATCATGCCAAGTTAGATGCTCAGGTACATGATCTAAAAAACCAAATGTATGATGATGAGAAGAAAGGGTCGTCATCATCAAGTTTCCTAGAGCTTAAGCTAAGCCAAGACTCATTAGAAAACCCACAAAGTGAACAAGAAATCGATACTAAACTTTCTCTTTCGTTGTTCTCTTCATCATCAAATTCAAGTGATTACAAACACAAAGAGAAGAAAACCCAGGTTGAGCGTTTATTTTTACAACAAAATTTCACACAAAGGAGTCTATTGGGCTGA 1359 0.3767 MGERISEGKEGSCCLITSPNNGSRKRSFIDLNEEAGDDENRSNKNDNEICSSSWQEGNLSSSNNNNATSSSEEEEEEDDKNNNNKGRRTSMVRQYVRSKMPRLRWTPDLHLAFVQAVNRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQSRAMQQGRHQILEMYQRLNVQAHFGVDNIINRSSSYVPSSSLPIKQQPYNIKPHHHASSRFHPTGIFNSHMMTRSSSLEDKDSRLYEASSHLLDVRDAIIRRNNSSNSNGAFRSCQILEQVKWPPPPPRGTLKDKNDNGSQESEKHETLVAISMDDNNTRFGAQPSSQQWSTTTLADYQCHHHQRSSFSVAFPAGHHAKLDAQVHDLKNQMYDDEKKGSSSSSFLELKLSQDSLENPQSEQEIDTKLSLSLFSSSSNSSDYKHKEKKTQVERLFLQQNFTQRSLLG* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1101 452 MobiDBLite consensus disorder prediction 27 45 - -
Amo18g1101 452 MobiDBLite consensus disorder prediction 285 312 - -
Amo18g1101 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 157 IPR017930 -
Amo18g1101 452 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 37 434 IPR044848 GO:0003700
Amo18g1101 452 MobiDBLite consensus disorder prediction 46 69 - -
Amo18g1101 452 Pfam Myb-like DNA-binding domain 103 153 IPR001005 -
Amo18g1101 452 MobiDBLite consensus disorder prediction 1 92 - -
Amo18g1101 452 Gene3D - 100 157 - -
Amo18g1101 452 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 37 434 - -
Amo18g1101 452 SUPERFAMILY Homeodomain-like 99 155 IPR009057 -
Amo18g1101 452 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 101 156 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1101 Amo-Chr18 19051090 19055521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1101 89 160 G2-like Transcription Factor Family AT2G42660 79.167 3.14e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo18g1101 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1101 - - aip:107612165 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1101 18 19051090 19055521 Amo18g1101 18 19051090 19055521 ECH