Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo18g1087 | ATGGGATCCCCCGCTGAAGCACCATCTCCTGATGCCGCACCCGCATCATCTCCTCCTCCTCCTCCGCCGCCGACGACGACTCGGCCCTCACCGTTCCCCGGACGGGAAGACTGCTGGTCGGAGGAGGCCACCTCCACCCTCATCGACGCATGGGGTTCCCGTTACCTCTCCCTCAGCCGCGGCAGTCTCCGCCAAAATCACTGGCAGGAAGTCGCCGCTGCCGTCAACGCCGCCCACGGCCACGACCCGAGACACCGCCGCACCGATGTCCAGTGCAAGAACCGCATCGATACCCTCAAAAAGAAGTACAAGGTCGAGAGGGCTAGGGTTTCCGATTCCACCGCCGGCGACGATGACGGCGACGGACGCGTATACTCCGGCACATGGTCTTTCTTCCACCGCATCGATTCTCTCATCGGAGACACGTATCCTTTGAAAAAGCAGTCCCCGCCGGTGAAATCCTCCCCTCGCCTTAAATCCCCTCCGGCGGCGAAGCCTTCGCCGCCGCCGTGGACGGTGACTCCGGTAGGTCCCCGATCCGGAACAAAGAAGCGACCTGCGCCGATGAGTTCCGATGACACTTATTTTCGCCGGAAGTTCTCGGCTTTTGCGGCCGCCGCGGTGGCGGCGGCTGCGGCTGAGAGTGAAGATTCAAAGGGGAGCAGCGAGAAGAGGAGAAGGGTAACAAAAAACGATGAAGAATGGGAAATTGGGTACCGAGAATTGGCACATGCTATTGAGAAAGTTGGTGAGATATATGAGAGAGTTGAAGCGGCGAAGAGGAAGCAAATGGTTGAGTTGGAGAAACAAAGGATGCAGTTTGCTAAGGATTTGGAGTGTCAGAGGTTGAAGCTGTTCATGGAGACTCAGCTTCACATACACAAGATCAATAATCACTCTTCTAATGATGCTGCTGATAGTTTCTCATAG | 930 | 0.5699 | MGSPAEAPSPDAAPASSPPPPPPPTTTRPSPFPGREDCWSEEATSTLIDAWGSRYLSLSRGSLRQNHWQEVAAAVNAAHGHDPRHRRTDVQCKNRIDTLKKKYKVERARVSDSTAGDDDGDGRVYSGTWSFFHRIDSLIGDTYPLKKQSPPVKSSPRLKSPPAAKPSPPPWTVTPVGPRSGTKKRPAPMSSDDTYFRRKFSAFAAAAVAAAAAESEDSKGSSEKRRRVTKNDEEWEIGYRELAHAIEKVGEIYERVEAAKRKQMVELEKQRMQFAKDLECQRLKLFMETQLHIHKINNHSSNDAADSFS* | 310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo18g1087 | 309 | MobiDBLite | consensus disorder prediction | 155 | 175 | - | - | |
| Amo18g1087 | 309 | PANTHER | SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR | 14 | 306 | - | - | |
| Amo18g1087 | 309 | MobiDBLite | consensus disorder prediction | 11 | 30 | - | - | |
| Amo18g1087 | 309 | MobiDBLite | consensus disorder prediction | 212 | 231 | - | - | |
| Amo18g1087 | 309 | Gene3D | - | 39 | 105 | - | - | |
| Amo18g1087 | 309 | Pfam | Myb/SANT-like DNA-binding domain | 36 | 138 | IPR044822 | - | |
| Amo18g1087 | 309 | MobiDBLite | consensus disorder prediction | 217 | 231 | - | - | |
| Amo18g1087 | 309 | MobiDBLite | consensus disorder prediction | 143 | 191 | - | - | |
| Amo18g1087 | 309 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Amo18g1087 | 309 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR ASIL2 | 14 | 306 | IPR044823 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo18g1087 | Amo-Chr18 | 18682182 | 18685179 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo18g1087 | 239 | 299 | Trihelix Transcription Factor Family | AT3G14180 | 49.180 | 2.90e-14 | 71.2 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | Trihelix | Amo18g1087 | Myb_DNA-bind_4 | 2.6e-22 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo18g1087 | - | - | gmx:100811154 | 310.071 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo18g1087 | 18 | 18682182 | 18685179 | Amo18g1087 | 18 | 18682182 | 18685179 | ECH |