Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1032 ATGGATGATTCAACCTCAGATTGTCAGCTGAATCAGGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTTCTGAGCCTCTCTCTGTTGTTGATGACCAGTTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGATTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTATATCTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACGAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCAGACCCTTGTTGTCCAAATAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCTGTTTCAAAATGTGTATACTCATCAAAGTTTAGGAAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACTAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACGATGTTGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTATGACTCAGTAGCAGTCAAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATATTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGTAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGACCAATTAGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCAGAGGAGCTGACTGCAATTCTGCACCGTACGTACGATAACATCATGGCTGAGATGGAATCATCGAAAGCCAAAAGGAAGGGGACATCTTCTTTATCTCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCTCCAAGGATTTGA 1074 0.4246 MDDSTSDCQLNQGEVDYEFESNEVSEPLSVVDDQFVPKVGMTFTTLEDAGKFYRNYAKAADFSTRVRSTNRKGNEIKNQLIISSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSDPCCPNKAEMLKQHRELSMSIRRTIENNEEAVSKCVYSSKFRKVQAQFRGKANCITRLTNSALGYSVYDVGEQVSSSIFNKFVVTYDSVAVKVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLLEPRSKRFDQLVFRSQNICEFASESEELTAILHRTYDNIMAEMESSKAKRKGTSSLSHEDANLESVNELQSPPRI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1032 357 Pfam FAR1 DNA-binding domain 51 135 IPR004330 -
Amo18g1032 357 Pfam SWIM zinc finger 214 247 IPR007527 GO:0008270
Amo18g1032 357 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 21 150 IPR031052 GO:0006355
Amo18g1032 357 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 168 321 IPR031052 GO:0006355
Amo18g1032 357 MobiDBLite consensus disorder prediction 340 357 - -
Amo18g1032 357 SMART 26again6 225 252 IPR006564 GO:0008270
Amo18g1032 357 MobiDBLite consensus disorder prediction 326 357 - -
Amo18g1032 357 PANTHER OS03G0843700 PROTEIN 168 321 - -
Amo18g1032 357 ProSiteProfiles Zinc finger SWIM-type profile. 214 250 IPR007527 GO:0008270
Amo18g1032 357 PANTHER OS03G0843700 PROTEIN 21 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1032 Amo-Chr18 16860898 16863754 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g1032 FAR1 7.1e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1032 - - adu:110276980 347.051