Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1019 ATGGAGGTGTCTTTGAGCGAGGCGGATGGTGATTGTGGAGGGAGTGATGGTGATGCTAACGAAGTAGAAAATTCTGATTTGGAAGACCTCGGTGGACTAAGTGTGGATGACATCCTCAAGAAGGTATGGCACATCATTGAAAATGCATATGAGTTCTATCGGGGTTTCGGAAAATTGCATGGATTCGGGGTGCGAAAGGGTGACTCCGGAAAAGACTGTGACGAGAATGTTGTAAGGTACAGGTTTTTTTGTAACAAGGAAGCGTTGAGGGAGCGTAAACACTACGACAGGGTTGACCGAACAAGGGAGATCGAAGGGGTTGGTGCCTTGATCCTGATTACCAGAAGGAGGATCATGAATTCCATGATATACACCCTAGAGGAGTACGAAGAACCTAATGTCCACATAATGTCATCATTTGGACGGTCAACCGGGAAGTTAACTTGCCAGTGTAATTTCTGGAAGAAGCATGGTTATCCATGCAGGCACATGTTTTTCGTCATGAAGGCAGAGCACTTAAAGGAGATTCCCGACAATATAGTTCTGCGTAGGTGGAGAACTGATGCAAAGTCCGCTGAGCAGTACACAGAAAATTGGGGGGACTATAGCGAGCGTGGTGTCATCCTTCGTCACGGTGCTCTCCATTCCGCCTCGCAATGGCTGTTTTTCCTAGGGGCACAAAGGTTGTCCATGTTCCAGAAGACTATGCGTGGAATTGAAAGTTTATGTAAAGAGCTGCAGATGGACTGTAGGGCATTTGGTTCTAGCATGAACCGGACCGAAGAATACGTTCGTGAAGCCAATCCAGCCCTTGGTAAAAGGAGGCGTTGCACCGGCTGCAAGGGCTTGGGACACACAAAGAGAAACTGCCCAGACAAGGGTGCCGGTAGACAAAATCCTGATCAGGCCGAGGAATGTGGGGGAATTAATGCCACCTGCGTAATCTCCAACGATGACTGGGAGTCTATCGTCGGTGATAATCTATGTGCTGAACCCGGGGGCAAATTCAATGCGGACTAG 1020 0.4833 MEVSLSEADGDCGGSDGDANEVENSDLEDLGGLSVDDILKKVWHIIENAYEFYRGFGKLHGFGVRKGDSGKDCDENVVRYRFFCNKEALRERKHYDRVDRTREIEGVGALILITRRRIMNSMIYTLEEYEEPNVHIMSSFGRSTGKLTCQCNFWKKHGYPCRHMFFVMKAEHLKEIPDNIVLRRWRTDAKSAEQYTENWGDYSERGVILRHGALHSASQWLFFLGAQRLSMFQKTMRGIESLCKELQMDCRAFGSSMNRTEEYVREANPALGKRRRCTGCKGLGHTKRNCPDKGAGRQNPDQAEECGGINATCVISNDDWESIVGDNLCAEPGGKFNAD* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1019 339 MobiDBLite consensus disorder prediction 1 24 - -
Amo18g1019 339 Pfam SWIM zinc finger 146 164 IPR007527 GO:0008270
Amo18g1019 339 SUPERFAMILY Retrovirus zinc finger-like domains 257 298 IPR036875 GO:0003676|GO:0008270
Amo18g1019 339 SMART 26again6 147 174 IPR006564 GO:0008270
Amo18g1019 339 ProSiteProfiles Zinc finger SWIM-type profile. 134 172 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1019 Amo-Chr18 16615879 16618253 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g1019 SWIM 0.00021 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1019 - - ahf:112769548 485.337