Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1018 AGACCCAAAACCTCCCCAACGGTCTTCATTCATACATACCACACCAAACCCCGAAAAAACTTCCGCCGGCGACACTTCACTTCCGCCGCATTTTTTCCCTCGGGATCCGAGCTCGCCGGAGCTTTCATTTCGCAGTCAGTCACCACAATGCAGCTCCACCACCGTGTCACCGCCGTGTCAGTTTTGATATTTTGCTTCGGAGTGATGTTAGTTTGCGGCCAGAAACAACGGCCACAGCACCGCATCCTCGATCCACATTGGCATGCTGGCACCGCCACGTGGTACGGCGATCCCGAAGGAGACGGTAGCACCGGAGGGGCGTGTGGATATGGAACGATGGTGGATGTGAAGCCGTTGAAGGCGAGGGTGGGTGCGGTGGGGCCGGTGCTGTACAAGAACGGGGAAGGGTGCGGAGAATGCTACAAGGTGAAGTGCTTGGACCCAACCATATGCTCCAAGCGAGCGGTGACGGTTATAATCACGGACGAGTGCCCTGGTTGTCCCTCTGATCGAACCCACTTTGACCTCAGCGGTGCCGCATTTGGCCGAATGGCGGTTTCCGGCGAGAATGGTCAGCTCAGGAACCGAGGTGAAATCCCAGTCATATACCAAAGAACAACTTGCACATATCCAGGCAAAAACATTGCCTTCCGTGTCAATGAAGGTTCTACACCCTTTTGGCTATCACTCTTGGCAGAGTGGGAGGATGGAGATGGAGACATCAGCTCCATGCATATACAAGAAGTAGGGTCAAGTGAGTGGCTGGAAATGAAACATCTGTGGGGTGCAAATTGGTGCATCATTGCGGGTCCTTTAAGAGGACCTTTCTCAGTTAAACTAAGCACATCGTCAGGGAGAAGCCTCACTGCCAGGGATGTTATTCCAAGCAACTGGTCACCAAAAGCCACTTATACCTCTCGCTTGAATTTCATTCCTTAG 939 0.5304 RPKTSPTVFIHTYHTKPRKNFRRRHFTSAAFFPSGSELAGAFISQSVTTMQLHHRVTAVSVLIFCFGVMLVCGQKQRPQHRILDPHWHAGTATWYGDPEGDGSTGGACGYGTMVDVKPLKARVGAVGPVLYKNGEGCGECYKVKCLDPTICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAVSGENGQLRNRGEIPVIYQRTTCTYPGKNIAFRVNEGSTPFWLSLLAEWEDGDGDISSMHIQEVGSSEWLEMKHLWGANWCIIAGPLRGPFSVKLSTSSGRSLTARDVIPSNWSPKATYTSRLNFIP* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1018 312 Gene3D - 209 307 IPR036749 -
Amo18g1018 312 Pfam Lytic transglycolase 128 202 IPR009009 -
Amo18g1018 312 PANTHER EXPANSIN-B3 64 312 - -
Amo18g1018 312 PANTHER EXPANSIN-LIKE PROTEIN B1 64 312 - -
Amo18g1018 312 Pfam Expansin C-terminal domain 215 295 IPR007117 -
Amo18g1018 312 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 226 306 IPR007117 -
Amo18g1018 312 SMART dpbb_1 123 203 IPR007112 -
Amo18g1018 312 Gene3D - 71 208 IPR036908 -
Amo18g1018 312 PRINTS Expansin/Lol pI family signature 86 101 IPR007118 GO:0005576
Amo18g1018 312 PRINTS Expansin/Lol pI family signature 196 212 IPR007118 GO:0005576
Amo18g1018 312 PRINTS Expansin/Lol pI family signature 104 122 IPR007118 GO:0005576
Amo18g1018 312 PRINTS Expansin/Lol pI family signature 292 306 IPR007118 GO:0005576
Amo18g1018 312 PRINTS Expansin/Lol pI family signature 127 145 IPR007118 GO:0005576
Amo18g1018 312 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Amo18g1018 312 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 105 213 IPR007112 -
Amo18g1018 312 SUPERFAMILY Barwin-like endoglucanases 85 212 IPR036908 -
Amo18g1018 312 PRINTS Major pollen allergen Lol pI signature 233 248 IPR005795 GO:0005576|GO:0019953
Amo18g1018 312 PRINTS Major pollen allergen Lol pI signature 217 232 IPR005795 GO:0005576|GO:0019953
Amo18g1018 312 PRINTS Major pollen allergen Lol pI signature 282 299 IPR005795 GO:0005576|GO:0019953
Amo18g1018 312 PRINTS Major pollen allergen Lol pI signature 145 155 IPR005795 GO:0005576|GO:0019953
Amo18g1018 312 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Amo18g1018 312 SUPERFAMILY PHL pollen allergen 213 306 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1018 Amo-Chr18 16610327 16612786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1018 59 248 Expansin Gene Family AT4G28250 64.583 1.58e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1018 K20628 - gmx:100780112 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1018 18 16610327 16612786 Amo18g1018 18 16610327 16612786 ECH