Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1005 ATGGGTTGCATAACTTCCAAGAGTTCTGCAGCTGTTGATGACAGTAGGGAAGGTATGAAAAGGAAATTGGCATCATCATCATCATCAAGCAAAAGGGTATCATCAAATATCAGTGTTCCAAGGCTGAATTCTTCTAGAAGAGTTGAGGATAATAAGGTTTTGGATGGTGTTGAGTTAAAGAATAAAATAGAGAAGCATGAATTGAGTGGTGTGGTTGATCATCATCATCATAATTATCATCATGGAATTGGAAGAGTTCCAAAGGCTTCACAGGGAGAGCAAGTTGCAGCAGGGTGGCCCACATGGCTTTCTTCTGTTGCTGGTGAAGCTATCAGAGGGTGGATACCTAGGAGTGCTAATACTTTTGAGAAGTTCTATAAAATTGGCCAAGGAACTTATAGTACTGTATATAAAGCACGTGACATAACTCACCAAAAGATTGTTGCCCTGAAGAGAGTACGTTTTGATAATCTCGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTCATTCTGCGCAGGCTTGACCATCCAAATGTAATAAAGTTGGAGGGTTTGATAACAGCGCCAACATCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACTGGACTTGCAGCAAATCCTGCCATTAAGTTTTCTGAACCACAGGTTAAATGCTACATGAAGCAGCTCCTTAGTGGATTAGATCATTGTCATGGTCATGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAACGGCATCTTAAAGATTGCAGATTTTGGCTTGGCAAATTTTTTAGATCCCCATCTTAATGTTCCATTGACCAGCCGTGTTGTAACTCTATGGTATAGACCCCCAGAACTTTTACTTGGAGCATCTCGTTATGGAGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTTGGAGAATTATATTCTGGCAGGCCCATATTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAAGATTTTTAAACTTTGCGGATCACCATCCGAGGACTACTGGCGCAAATTGCGGTTGCCACATTCAACGGTATTCAGGCCTCCGCACCATTATAGGCGATGTATTACAGACACATTTAAGGAATGCCCATCTGCTGCCGTGAGGCTTATAGAGACCCTACTTTCTGTTGATCCTACAAATCGAGGAACAGCAGCCGATGCTCTAAAGAGTGATTTCTTTAAATTGGAACCCCTTGCTTGTGATCCATCAAGTTTACCAAAATATCCTCCTAGCAAAGAGATTGACTCTAAAATCTTGGATGAGGCAACAAGAAGGCAAGGAGCTGCTGGGGGAAAGCAGCAAAAATCTGGATGGAGAGTCAGACAGGATAACGAACAACATTCTTTTGTCCAATCAAAAGGCAATGTTAACTCCCGCAAGTCRGTGCAGCAAGGGCAACATTGTTCAAGCTCAAAGAGCCAGAGTGGATTGTTAAACTCTCATGGCGAAGCAGTGTCTGGATATTTAGTGTTTCCACATAACCAGTCAAATGACACTAAAGAAATGGAAAATGACTTCTCTGGACCTCTTTATCGGAGGCCTTCACATTCAGGTCCATTAGTTCCGGTCTTTGCCTGGGAAAAGGCTAGAAACGAAGTTGGTGACCAGATTTCTGGATCAAACAAAGCCAATCTTTCAAAAGTGTCTGGTTTAGTGGCATCTAGGACTACGGTGTCTCAGGATCAAGAACAAAAGCCAGTTCCCTTGAAGTCGAAGAAAACAAGTCAACTACAACAATCTTTTGTTTCGACTAATGGTGGTTCAGGAACAAGGAGGAGGCATGATAGGTCTCGCTTGTCTCAGAGAATCGATATCAGTCAACTTCAAGAAGGAAAAATCCCCACTGAAAATTTAATTCAGGATGGACGTGAGTCCATGGGAAACAAAATGTATCTCTCTGGTCCATTGGTGGTTTCATCAAACAATGTAGATCAGATCCTCAAAGAACATGATAGAAAGATCCAAGAATATTCAAGGCGATTAAGAAATGATAGGTCCAAAGGTGACAAGATTCATGCAAAGTGA 2064 0.4196 MGCITSKSSAAVDDSREGMKRKLASSSSSSKRVSSNISVPRLNSSRRVEDNKVLDGVELKNKIEKHELSGVVDHHHHNYHHGIGRVPKASQGEQVAAGWPTWLSSVAGEAIRGWIPRSANTFEKFYKIGQGTYSTVYKARDITHQKIVALKRVRFDNLDPESVKFMAREILILRRLDHPNVIKLEGLITAPTSRSLYLVFEYMEHDLTGLAANPAIKFSEPQVKCYMKQLLSGLDHCHGHGVLHRDIKGSNLLIDNNGILKIADFGLANFLDPHLNVPLTSRVVTLWYRPPELLLGASRYGVAVDLWSTGCILGELYSGRPILPGKTEVEQLHKIFKLCGSPSEDYWRKLRLPHSTVFRPPHHYRRCITDTFKECPSAAVRLIETLLSVDPTNRGTAADALKSDFFKLEPLACDPSSLPKYPPSKEIDSKILDEATRRQGAAGGKQQKSGWRVRQDNEQHSFVQSKGNVNSRKSVQQGQHCSSSKSQSGLLNSHGEAVSGYLVFPHNQSNDTKEMENDFSGPLYRRPSHSGPLVPVFAWEKARNEVGDQISGSNKANLSKVSGLVASRTTVSQDQEQKPVPLKSKKTSQLQQSFVSTNGGSGTRRRHDRSRLSQRIDISQLQEGKIPTENLIQDGRESMGNKMYLSGPLVVSSNNVDQILKEHDRKIQEYSRRLRNDRSKGDKIHAK* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1005 687 MobiDBLite consensus disorder prediction 22 44 - -
Amo18g1005 687 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Amo18g1005 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Amo18g1005 687 PANTHER CELL DIVISION PROTEIN KINASE 55 677 - -
Amo18g1005 687 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Amo18g1005 687 MobiDBLite consensus disorder prediction 568 611 - -
Amo18g1005 687 MobiDBLite consensus disorder prediction 568 601 - -
Amo18g1005 687 PANTHER CYCLIN-DEPENDENT KINASE 55 677 - -
Amo18g1005 687 MobiDBLite consensus disorder prediction 463 492 - -
Amo18g1005 687 SMART serkin_6 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1005 687 Coils Coil 660 680 - -
Amo18g1005 687 CDD STKc_CDK9_like 122 406 - -
Amo18g1005 687 Gene3D Transferase(Phosphotransferase) domain 1 205 444 - -
Amo18g1005 687 SUPERFAMILY Protein kinase-like (PK-like) 115 407 IPR011009 -
Amo18g1005 687 Pfam Protein kinase domain 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1005 687 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1005 687 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1005 Amo-Chr18 16377460 16383094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1005 114 447 Core Cell Cycle Gene Families AT5G10270 48.857 1.27e-108 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo18g1005 Pkinase 7.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1005 - K08819 gmx:100775462 902.508