Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1004 ATGAGTGGTTACGATGTTGATGGCCATAGAAACCATGACAACTACTCATTCTTCAGTTTCCACAACCCATCATCATCGGATCGAAGCTACTCGAACAAAAAAATCTTGGTGATGGCCGTAGCTTCCTTAACAATGGTCATCATCGTGGTCTTGGCCCTTCACATCTACGCAAGGGTGGTTCTGAGACGCCAAGCTCGAAGAAGATTCGCCATTCACCAACTCAGCCTCACCGTACAAGCCCAAGCCCAAGCCCAAGCCCACGAATACAACACAGGCCTGGACCCTAACGTCATAGCCTCTCTCCCCACCTTCATCTACAAACGAAAAAAGAGAGAAGAAGATGATGAAGATGGCGAGTGTGCTGTGTGTTTGAGTGGTGTAGAAGATGAACAAGAGGTGAGGTTGCTGCCGAATTGCAAGCACAGTTTCCATGTTGCTTGCATAGATACATGGCTGGCTTCTCATTCCACGTGTCCAATTTGTAGAACCAAGGCTGAACCAATCATAGGCCTTCAACTTCAACCTCACCCTCGTGAGCCTCCTATTCTTGTTCATGATGATGCTTCAACTTTTGAAGCTACTTCTGATAATAACAACAATGCTGCTATTGTGGGTAAGAACATTACTGGTTCTTCTGTTTCAAGATTCAGCAGCTCCTTTAGAAGGATACTAAGTAGGGATAGATCTTCTAGCACAAGAATTCAACCTTCCATAATTACTCATCTTGATGATCATGATTTAGAGAGCCAGTAA 753 0.4475 MSGYDVDGHRNHDNYSFFSFHNPSSSDRSYSNKKILVMAVASLTMVIIVVLALHIYARVVLRRQARRRFAIHQLSLTVQAQAQAQAHEYNTGLDPNVIASLPTFIYKRKKREEDDEDGECAVCLSGVEDEQEVRLLPNCKHSFHVACIDTWLASHSTCPICRTKAEPIIGLQLQPHPREPPILVHDDASTFEATSDNNNNAAIVGKNITGSSVSRFSSSFRRILSRDRSSSTRIQPSIITHLDDHDLESQ* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1004 250 Pfam Ring finger domain 119 162 IPR001841 -
Amo18g1004 250 SMART ring_2 120 161 IPR001841 -
Amo18g1004 250 PANTHER RING FINGER DOMAIN-CONTAINING 31 249 - -
Amo18g1004 250 SUPERFAMILY RING/U-box 98 171 - -
Amo18g1004 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 168 IPR013083 -
Amo18g1004 250 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Amo18g1004 250 CDD RING-H2_PA-TM-RING 119 162 - -
Amo18g1004 250 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 31 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1004 Amo-Chr18 16324670 16325710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1004 1 231 C3H Transcription Factor Family AT2G42360 43.089 6.35e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1004 K19038 - gmx:100780265 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1004 18 16324670 16325710 Amo18g1004 18 16324670 16325710 ECH