Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0989 ATGACTCAGTGCAACAGTAATGATTACCCTGAAAACAATCATAACACCATTGTGGAGAGGAACAAAGATATCTTAATTAGTAGAACTTGTCCATCATGTGGTCATCATATCAAATGTCAACAAGACCACCAGGGTGCTGGAATTCACGATTTACCTGGGCTACCAGCTGGAGTGAAGTTTGATCCAACAGATCAGGAAATTCTAGAACATTTGGAAGCCAAGGTGAGGTCTGATATTCACAAGCTTCACCCCTTAATTGATGAGTTTATCCCTACTCTTGAAGGCGAGAATGGAATCTGCTGCACCCATCCAGAAAAGTTGCCAGGAGTAGGCAAAGATGGGTTGATCCGTCACTTCTTTCACCGGCCATCCAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAAGTTCACACTGATGCTGATGGCAGTGAAACAAGGTGGCACAAAACAGGTAAAACTAGACCAGTCTACATCAGTGGCAAGTTGAAAGGCTACAAGAAAATCCTTGTTCTCTACACCAACTACAAGAAGCAAAGGAAGCCTGAGAAAACAAACTGGGTCATGCACCAGTACCACCTTGGCAACAATGAAGAGGAGAAAGAAGGTGAGTTAGTTGTGTCTAAGGTTTTCTACCAGACACAACCTAGACAATGTGCAGGTTCACTACTCATCAAAGATTCATCATCATTCCCTGCTAAACTAAAGGATCAAAGTGGTGTTCATCATCATGAAGTGACTAATAATCATAAGAACAATGGGTTTGTGGAATACTACAATGCATCCTTTATAAGCTTTGCTCAAGGGGAACAACAACATAGGTCAAACAATCCCACATTGATTTCCCATTTTCCTGCTCATGATGGGGCTCCGTTCATTCCTTGA 885 0.4203 MTQCNSNDYPENNHNTIVERNKDILISRTCPSCGHHIKCQQDHQGAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVYISGKLKGYKKILVLYTNYKKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCAGSLLIKDSSSFPAKLKDQSGVHHHEVTNNHKNNGFVEYYNASFISFAQGEQQHRSNNPTLISHFPAHDGAPFIP* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0989 294 Gene3D NAC domain 63 217 IPR036093 GO:0003677|GO:0006355
Amo18g0989 294 SUPERFAMILY NAC domain 49 213 IPR036093 GO:0003677|GO:0006355
Amo18g0989 294 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 293 - -
Amo18g0989 294 Pfam No apical meristem (NAM) protein 55 194 IPR003441 GO:0003677|GO:0006355
Amo18g0989 294 ProSiteProfiles NAC domain profile. 54 213 IPR003441 GO:0003677|GO:0006355
Amo18g0989 294 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 293 IPR044799 GO:0003700
Amo18g0989 294 MobiDBLite consensus disorder prediction 133 148 - -
Amo18g0989 294 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0989 Amo-Chr18 16022639 16024780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0989 28 294 NAC Transcription Factor Family AT4G28500 65.568 2.82e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo18g0989 NAM 4.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0989 - - gmx:100791648 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0989 18 16022639 16024780 Amo18g0989 18 16022639 16024780 ECH
Amo18g0989 18 16022639 16024780 Amo08g1292 08 21080982 21082135 hybridization