Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0988 ATGCCTCTCTTATTCTTCTTCTTCTTCTTCTTTGTTACTCCCACTCTCTCACTCAACCAAGAAGGCCTGCTCCTTCTAGAAGCCAAGAACCAACTACTTCCATCATCCTCCTCCTCCCTCGCCGACTGGAACCCCCGCGACCCCACCCCATGCAACTGGACCTGCGTCACATGCAACCCCAATACCTCCCACGTCATCTCCCTCTCCCTCTCCTCTCTCTCCCTCTCCGGCCCTATTCCCTCGTCCCTCTGCCGCCTACCCTCCCTCTCTACTCTCTATCTCGACGACAACTTCCTCATCTCCCCCCTACCCTCCACTCTTTCCCTCTGCACCTCCCTCACCCACCTTAACCTCTCTGGAAACCTCTTCACCGGACCCATCCCTTCTTTTCTCTCCTCTCTCCCCTCCCTTCTCCACCTCGACCTCTCCTTCAACAACTTTTCCGCTTCTATTCCCCCTTCCTTCTCTCTCTTCCCCAACCTCCGATCCCTCAACCTCGTCGAAAACCTCCTCAACGGAACCATCCCTTCGTTTCTCACCAACCTCACCACCTTAACCTTCCTCCACTTGTCCTACAACCCTTTTCTTCCTGCTCCGTTACCGAGTGAGTTCGGCAACATGACCAACCTCCAGGACTTGTCTCTTTCCGGCTGCAACCTCCTCGGTCCAATTCCCGCTTCATTGGGGAAGCTATCCAACCTTCGAAACCTTGAACTAACCTATAACAGCCTCCAGGGTGCCATACCGGAGTCTCTCATCTCCGGCCTCACCAGCATCGTGTTTCTCGAGCTCTATGAAAACTCGCTCTCTGGTTCATTGCCACGTGGCGCTGTGTGGAACAACCTCACCCATTTGGAAGGCTTCGACGCCTCCGGGAACGACTTGACAGGGACGATTCCCTCCGAGTTGACTCGGTTGAAGAAACTCGGTTCTCTCAACTTGTTCAATAACAACCTCGAAGGCTCTCTGCCGGAGAGTATCGTCGAGGCCGAGAGCTTGTACGAGCTTAAACTGTTCAACAACTCGCTCAATGGGTCGTTGCCGAGTCAACTCGGGAGCAACTCGCCCCTGCAGACACTCGACCTCTCGTACAACAACTTCTCCGGCGAGATTCCGGCGGGATTGTGCCGCCGGGGAGCGATGCAGGAGATCATGCTAATTTACAACTCGTTCTCCGGCAGAATCCCCGAGAGTCTGGGGGATTGCAGGAGCTTGATGAGGGTTCGAATAAGGAACAATAACATTTCGGGAACTGTTCCCGATGCTATGTGGGGACTGCCACACCTTTTTCTTCTGGAGCTTGATGATAATTCCCTTACTGGGTCGATTTCTACTTCTATTTCTGGCGCAAGCAACATGTCAAGTTTGTCGCTTTCCTTCAACATGTTCTCAGGGTCTGTTCCCCAGGAAATTGGGAATTTGGACAACCTTGTTCAGTTTGTCGCCAGCCATAATAGGCTATCTGGTCGGATTCCGACGAGTGTTGTGAAATTGAGTCAGTTGGGGAAGCTTGTGATTAGTGATAATGAGCTTTCGGGTGAGATACCTTTGGGGATTAGTGCTTTGGAAAAGCTTAATGATCTTGATTTGTCCAATAATAAGCTTGATGGTAACATTCCAAGTGAATTAGGAACCTTGCCGGTGCTTAATTATCTTGATCTTTCAGGGAATCTTTTCTCCGGTAGGATCCCAATTGAGCTGCAGAATTTGAATCTTAATTTGCTGAATTTGTCGAATAATCAGCTTTCAGGGGAGATCCCTAAAGAATTCGACAATGAGAATTACAAGAAGAGTTTTCTTGGAAATCCAGGGCTGTGTAGTTCTTCTTCAGTCTCTGGGCTCTGTCAAAATTTAGGTGAGAAGAAGAAGAACAAGATAAAGTATGATTGGGTTTTCAGGTTCATATTTGTGCTTGCTGGAATTGTGTTTGTTGTTGGGGTAACATGGTTTTGGTTCAAATTTAGGAGCATTAAGAAGATAAAGAAGAAAGTGATGCCTAACATGTTAAAATGGAGATCTTTTCACAAACTTGGATTCAGTGAGTATGAGGTTGTGAAGTTGCTGAGTGAAGACAATGTCATAGGTAGTGGAGCATCCGGGAAAGTTTACAAGGTTGTCCTGAGCAATGGTGAAGCTGTGGCAGTGAAGAAATTATGGGGACCAAAAAACAGGACTACTGTTTCTGAAAAAGATGGTTTTTTTGAAGCTGAGGTGGAAACATTGGGAAAAATCAGGCACAAGAATATTGTGAGGCTATGGTGTTGTTGTAACAGTGGTGATAGCAAGCTCTTAGTTTATGAGTACATGCCTAATGGAAGCCTTGCTGATTTGCTTCACAGTAGCAAGAGAAGCTTGTTGGATTGGCCAATTAGGTACAGAATTGCCATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCACTATTGTGTTCCTCCTATTGTTCATAGGGATGTCAAATCCCACAATATATTGCTTGATGAAGACTTTGGAGCAAAAGTTGCAGATTTTGGTGTGGCCAGAACTTTTAGCAGGGTTACCCAAGGTGCAGAATCTATGTCTGCAATTGCCGGATCTTATGGTTACATAGCACCAGAATATGCTTACACTCTAAGAGTGAATGAGAAGAGTGACATCTATAGTTTTGGAGTGGTAATTTTAGAATTGGTAAGTGGGAGAGCTCCACTTGATCCAGCATATGGTGACAAAGATTTGGTGAAATGGGTTTCTTCCACATTGGAGCAGAGTGGAGAGGATCAAGTGATTGATCCAACTATGGATGTTAAGTACAAGGGAGAAATCATCAAGGTACTAAACATAGGGCTCCTTTGCACAAACCCTCTTCCCATAAACCGGCCTTCAATGCGCAAGGTGGTGACAATGCTGCATGAAATATCTGCAATTCCCAGAACAACAAGTGGAAAATTGTCCCCTTATTATCAAGAAGAGGCATCTGATAATGAAAATCATCATGGAAACACGGTTTGA 2985 0.4667 MPLLFFFFFFFVTPTLSLNQEGLLLLEAKNQLLPSSSSSLADWNPRDPTPCNWTCVTCNPNTSHVISLSLSSLSLSGPIPSSLCRLPSLSTLYLDDNFLISPLPSTLSLCTSLTHLNLSGNLFTGPIPSFLSSLPSLLHLDLSFNNFSASIPPSFSLFPNLRSLNLVENLLNGTIPSFLTNLTTLTFLHLSYNPFLPAPLPSEFGNMTNLQDLSLSGCNLLGPIPASLGKLSNLRNLELTYNSLQGAIPESLISGLTSIVFLELYENSLSGSLPRGAVWNNLTHLEGFDASGNDLTGTIPSELTRLKKLGSLNLFNNNLEGSLPESIVEAESLYELKLFNNSLNGSLPSQLGSNSPLQTLDLSYNNFSGEIPAGLCRRGAMQEIMLIYNSFSGRIPESLGDCRSLMRVRIRNNNISGTVPDAMWGLPHLFLLELDDNSLTGSISTSISGASNMSSLSLSFNMFSGSVPQEIGNLDNLVQFVASHNRLSGRIPTSVVKLSQLGKLVISDNELSGEIPLGISALEKLNDLDLSNNKLDGNIPSELGTLPVLNYLDLSGNLFSGRIPIELQNLNLNLLNLSNNQLSGEIPKEFDNENYKKSFLGNPGLCSSSSVSGLCQNLGEKKKNKIKYDWVFRFIFVLAGIVFVVGVTWFWFKFRSIKKIKKKVMPNMLKWRSFHKLGFSEYEVVKLLSEDNVIGSGASGKVYKVVLSNGEAVAVKKLWGPKNRTTVSEKDGFFEAEVETLGKIRHKNIVRLWCCCNSGDSKLLVYEYMPNGSLADLLHSSKRSLLDWPIRYRIAIDAAEGLSYLHHYCVPPIVHRDVKSHNILLDEDFGAKVADFGVARTFSRVTQGAESMSAIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVSGRAPLDPAYGDKDLVKWVSSTLEQSGEDQVIDPTMDVKYKGEIIKVLNIGLLCTNPLPINRPSMRKVVTMLHEISAIPRTTSGKLSPYYQEEASDNENHHGNTV* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0988 994 SUPERFAMILY Protein kinase-like (PK-like) 684 962 IPR011009 -
Amo18g0988 994 Gene3D Ribonuclease Inhibitor 380 492 IPR032675 -
Amo18g0988 994 Gene3D Ribonuclease Inhibitor 18 174 IPR032675 -
Amo18g0988 994 SUPERFAMILY RNI-like 67 416 - -
Amo18g0988 994 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Amo18g0988 994 ProSiteProfiles Protein kinase domain profile. 688 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0988 994 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Amo18g0988 994 SUPERFAMILY L domain-like 382 591 - -
Amo18g0988 994 SMART serkin_6 688 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0988 994 Gene3D Transferase(Phosphotransferase) domain 1 769 975 - -
Amo18g0988 994 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 974 - -
Amo18g0988 994 Gene3D Phosphorylase Kinase; domain 1 658 768 - -
Amo18g0988 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Amo18g0988 994 PRINTS Leucine-rich repeat signature 357 370 - -
Amo18g0988 994 PRINTS Leucine-rich repeat signature 522 535 - -
Amo18g0988 994 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 4 974 - -
Amo18g0988 994 Pfam Protein kinase domain 690 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0988 994 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Amo18g0988 994 SMART LRR_typ_2 86 110 IPR003591 -
Amo18g0988 994 SMART LRR_typ_2 231 255 IPR003591 -
Amo18g0988 994 SMART LRR_typ_2 256 280 IPR003591 -
Amo18g0988 994 SMART LRR_typ_2 522 546 IPR003591 -
Amo18g0988 994 SMART LRR_typ_2 182 206 IPR003591 -
Amo18g0988 994 SMART LRR_typ_2 351 378 IPR003591 -
Amo18g0988 994 SMART LRR_typ_2 306 330 IPR003591 -
Amo18g0988 994 SMART LRR_typ_2 134 157 IPR003591 -
Amo18g0988 994 Gene3D Ribonuclease Inhibitor 493 615 IPR032675 -
Amo18g0988 994 Gene3D Ribonuclease Inhibitor 278 379 IPR032675 -
Amo18g0988 994 Gene3D Ribonuclease Inhibitor 175 277 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0988 Amo-Chr18 15997488 16001294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0988 14 986 Receptor kinase-like Gene Family AT1G28440 56.338 0.0 1064
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo18g0988 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0988 - - aip:107613214 1731.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0988 18 15997488 16001294 Amo18g0988 18 15997488 16001294 ECH
Amo18g0988 18 15997488 16001294 Amo08g1291 08 21054825 21058505 hybridization