Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0981 ATGAGATTTGACATGGTTCCCAGTGAAAGATTCAAGCTTTGGCTAAGAATTGCACTTGGGTGGTGGATTTTTCTACTGTTTCTTCCCTCTGTGACTGGTCTCAGACCCTTACGGGAAAGAACTCGTTCTTGGGGCGATGAGTGGCTTACAAGAAAAGATGAGACTGATAGTGGTCCATTTTCACAATGGAACATAACTGGAACTTATAGAGGGAGTTGGAAGTTTTCAGATGCCGCAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAACTGGTAATTCTGTGATTGAATTAGTTAGTACACCAACGAAGATAACTGGAGTACATTACGTTCAGGGGGTTATTATATTCCATGATGTGTTTGACAATGAATATAATGTTGGTGGTGCCCAGATCAGAGTGGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGGAGAATTGAATCAGGATGGAGATTATATTTTATCCAATCCATACCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCCCGAGATAAGATGTGGAGAAAGAAACATTCTCCAATGCATGACATGGAGAAACATTGTAATATTGAAATTGCTGCACAGCTTTCACGCTTACCATCAACCAAAAATGAAGGAGAACATGATCGATTTCACCTCGAAGGTTTGATGGAGAGTCCCTCCACGGATGATGATGGGGACTGTTTCTCACCTTTACTGTTAAATACAACTTCTGTCAACATTGAGGTGTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCTTTCTTGCAAGTTCTTCTACTGATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGGGCTGCTAAGGTTTCAATATTGTTGATTGGCCAGCAGGCGATAATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTCGTCTTTTCAATATTTGAGATGAGATATCTCCTCACCATCTGGAAGGCAAATAGGCCTTTGAGTAGCGGAGAAGGTTGGGAGGCAATGAGGCGCGAACTTTCCGTCTTATATAGCCGTTTCTATGGAATCCTGTTGGGAGGCATTCTCCTCATGTACGAGTTCCATCACCATTTGAAACCTATTCTTCTTCTTATATACTCCTTTTGGATACCTCAGATAATCACCAACGTTATCCGTGACTCGCGCAAGCCGCTGCATCCTCATTATATCCTCGGGATATCTGTTACTCGCCTAGCAATCCCGCTATATGTTTTTGGTTGCCCAAACAACTTCATGCGCATACAGCCGGACAAGAGCTGGTGTGTTTCGTTGGCTGCATTTATTGGCCTTCAAGCTTCAGTTCTTCTTCTGCAGCATTATCTCGGCTCACGGTGGTTCATCCCTCGCCAGATACTGCCCGAGAAGTACAGCTATTATAGGAGGTTTAATCAAGATGCAAGACACGCTATGGATTGTGTTATTTGCATGACATCCATTGATCTTAATCAACGGTCTAATGATTGTATGGTGACACCTTGTGATCATTTCTTTCACTCTGGTTGTCTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCTCGCTACCGCCTGCATAA 1689 0.4251 MRFDMVPSERFKLWLRIALGWWIFLLFLPSVTGLRPLRERTRSWGDEWLTRKDETDSGPFSQWNITGTYRGSWKFSDAANGSSRFPDIRKTTGNSVIELVSTPTKITGVHYVQGVIIFHDVFDNEYNVGGAQIRVEGVYIWPFRQLRMVANSGKEGELNQDGDYILSNPYHLLGVFSSQVLQDSSRDKMWRKKHSPMHDMEKHCNIEIAAQLSRLPSTKNEGEHDRFHLEGLMESPSTDDDGDCFSPLLLNTTSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILLIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLTIWKANRPLSSGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHHHLKPILLLIYSFWIPQIITNVIRDSRKPLHPHYILGISVTRLAIPLYVFGCPNNFMRIQPDKSWCVSLAAFIGLQASVLLLQHYLGSRWFIPRQILPEKYSYYRRFNQDARHAMDCVICMTSIDLNQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0981 562 SMART ring_2 512 555 IPR001841 -
Amo18g0981 562 ProSiteProfiles Zinc finger RING-type profile. 512 556 IPR001841 -
Amo18g0981 562 Pfam Ring finger domain 511 556 IPR001841 -
Amo18g0981 562 PANTHER RING ZINC FINGER PROTEIN 8 562 - -
Amo18g0981 562 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 8 562 - -
Amo18g0981 562 SMART ringv_2 511 556 IPR011016 GO:0008270
Amo18g0981 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 562 IPR013083 -
Amo18g0981 562 SUPERFAMILY RING/U-box 493 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0981 Amo-Chr18 15884145 15889926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0981 512 559 C3H Transcription Factor Family AT4G12190 39.583 4.80e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0981 K23788 - gmx:100785460 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0981 18 15884145 15889926 Amo18g0981 18 15884145 15889926 ECH