Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0979 ATGGACCGGGGTGGTGGTGAAGACGCGCCGCTAGAGGCGAAGAGGGAGCCTAAGCCGGATGAAGATCATAATAATAATAAGAAGAAGAAGAAGAAGAAAGAAGTGCCGGTGACATGTGTTAGCGGGAAGAAAGGTTCCGGTGGCGGCATGCGGTGTTGTCAAGCTGAGAAGTGCAAGGCGGATCTTGAGGAGGCAAGGCAGTACCATAGGAGGCACAAGGTGTGTGAGTACCATGCCAAGGCTCAGGTGGTTCTTGTTTCTGGCATTAGACAACGCTTCTGTCAGCAATGTAGCAGGTTCCATGAGATAGGTGAATTTGATGACACAAAACGAAGTTGCCGGAGCCGTTTGGCCGGACACAACAAACGGCGAAGAAAGAACTCTGATTCTCAAGCAGAAGGGTCGAGGCGCAAAGGGATATGTCCTCGGTTGAAGAAGGACACTGCCTGTGGAGATGATAGGAGCAGAATTCAGATTGCAATCCAAGAGAGTGGAGCTTATAAACATTTCCAGATAAGATGA 522 0.4962 MDRGGGEDAPLEAKREPKPDEDHNNNKKKKKKKEVPVTCVSGKKGSGGGMRCCQAEKCKADLEEARQYHRRHKVCEYHAKAQVVLVSGIRQRFCQQCSRFHEIGEFDDTKRSCRSRLAGHNKRRRKNSDSQAEGSRRKGICPRLKKDTACGDDRSRIQIAIQESGAYKHFQIR* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0979 173 MobiDBLite consensus disorder prediction 1 40 - -
Amo18g0979 173 ProSiteProfiles Zinc finger SBP-type profile. 50 127 IPR004333 GO:0003677
Amo18g0979 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 173 IPR044817 GO:0003677
Amo18g0979 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 36 173 - -
Amo18g0979 173 MobiDBLite consensus disorder prediction 124 138 - -
Amo18g0979 173 Gene3D - 44 114 IPR036893 GO:0003677|GO:0005634
Amo18g0979 173 Pfam SBP domain 53 126 IPR004333 GO:0003677
Amo18g0979 173 SUPERFAMILY SBT domain 51 130 IPR036893 GO:0003677|GO:0005634
Amo18g0979 173 MobiDBLite consensus disorder prediction 1 28 - -
Amo18g0979 173 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0979 Amo-Chr18 15840992 15842253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0979 40 159 SBP-box Gene Family AT1G53160 56.000 2.02e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo18g0979 SBP 6.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0979 - - ccaj:109810441 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0979 18 15840992 15842253 Amo18g1630 18 32441406 32442710 ECH
Amo18g0979 18 15840992 15842253 Amo18g0979 18 15840992 15842253 ECH
Amo18g0979 18 15840992 15842253 Amo20g0373 20 4736316 4737421 ECH