Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0974 ATGAGTATCTGTTCCGATCAGCAGCACCATCACAAGTTTTACCCTTCTCAACAACTCCTTTCTCCTAAGAAGTCCCTCAGAGATATTGACGTTCCACCAAGGAAGCTCCTCACCCGTCGAGCCGCCGCCGTCGACGCCGGTGAAATGTTCTCCGACGACACCCTTTTTCAGAAATTCCTCCCTTGCAACAACCCTGCTGACGATTCTGGCTCTGACGGCGACGACCCTTACTCGTCCGACCACTTCCGGATGTATGAGTTCAAGGTCCGCCGTTGCACTCGCAGCCGGAGCCATGACTGGACTGACTGCCCTTTTGCCCACCCCGGCGAAAAGGCCCGCCGTCGCGACCCACGTCGGTATCACTACTCTGGAACGGTCTGTCCAGAATACCGGCGCGGCGCGTGCAGCCGTGGTGACAGCTGCGAGTTTGCACACGGCGTCTTTGAATGCTGGCTCCACCCTGCAAGGTACAGAACCGAAGCATGCAAAGATGGAAAGAACTGCAAGAGGAAAGTGTGCTTTTTCGCGCACACTCCGAAACAACTGAGGATCCTTCCAGTTACAATGAGTACTTCGAATGACATCTCTCCATGCAAGAAGAACAAGCTTTTCCTGAACCCTTCGTCAGGTTCTTCTAGTAACAATAGCTGCTGTTTGTTCTGTCACCACTGTGCCGGTGGTGGTGGTGCTGTTAATTCTCCAACTTCAACGCTTTTAGGCATGTCCCGTTTTTCGCCGCCGCTCTCACCATCGTCATCCGCCACGTCGCCGCCGGTTTCTCCGATTAGTAGGCTGTCCCGCTACGGTGCGTGTCGTGGTGGCGGTGGTGGTGGTGCCAGTAACTTGAGTTACAAGGACGTGGTTAATGAATTGATGAGTTCTTTGGAGGGTTTGAGTTTTAGCGACGGTTTGAATTACAGCGACGTTTCAGGTGTTTCTGCTGCAAAAGTAGCAACTAACATGCCCTGGGTTGATGTTCCTCTGAATTGTGAGGATCAGCAAGAGTTTATTTTTTCTCCGTCTTCTCCAATGATGATGACCCCAACAAGAAGCTGTGATGATGATGGGAAATTTTCGAGGTTTTTTATTGGCAACGAAAACAGGGTGGTTGCTCATAAATCTAATTCCGATGCTAATATTTCTAATGATATTAATGGTGCGAATAATTGCCCAGCTCCTGATCTCGGATGGGTGAATGATCTTCTGATGTAG 1212 0.5066 MSICSDQQHHHKFYPSQQLLSPKKSLRDIDVPPRKLLTRRAAAVDAGEMFSDDTLFQKFLPCNNPADDSGSDGDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGACSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPKQLRILPVTMSTSNDISPCKKNKLFLNPSSGSSSNNSCCLFCHHCAGGGGAVNSPTSTLLGMSRFSPPLSPSSSATSPPVSPISRLSRYGACRGGGGGGASNLSYKDVVNELMSSLEGLSFSDGLNYSDVSGVSAAKVATNMPWVDVPLNCEDQQEFIFSPSSPMMMTPTRSCDDDGKFSRFFIGNENRVVAHKSNSDANISNDINGANNCPAPDLGWVNDLLM* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0974 403 SUPERFAMILY CCCH zinc finger 120 150 IPR036855 GO:0046872
Amo18g0974 403 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Amo18g0974 403 SMART c3hfinal6 156 179 IPR000571 GO:0046872
Amo18g0974 403 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 28 402 - -
Amo18g0974 403 Gene3D - 121 185 - -
Amo18g0974 403 PANTHER UNKEMPT FAMILY MEMBER 28 402 IPR045234 -
Amo18g0974 403 ProSiteProfiles Zinc finger C3H1-type profile. 122 148 IPR000571 GO:0046872
Amo18g0974 403 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 146 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0974 Amo-Chr18 15761761 15763196 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0974 74 183 C2H2 Transcription Factor Family AT5G07500 70.909 9.65e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo18g0974 zf-CCCH 3.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0974 K23047 - gmx:100801371 442.195