Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0973 ATGCCTGCACAGAAGCGCCCTTACCCTGACACTCTCGACGACGCCGACGACTCCTCTAACCACCTCTTCCCGCATCGCCACCCCAAGCACCACCGCGACCGCACCCTCAAGCCCCACCATCCAGATGAAGATGCTGCTGGAGCCCACAAGGAAGAGGACGAGCAAGAACAAGAGCAAGGGGATGCTGAGCAAGAAGATGAGGAAGATGAGCAACAAGGAGCAGAAGAAGAAGATGATGATGATGAAGAAGAAGAAGAAGAGGACGATGACGAAGATGAAGATGAAGGTGAGGGAGATGAAGAAGATGAAGAAGAAGGGAAACACAACGACGAGGATTCTGACGACACCCCATCTTCGGATTCTGAAGAAAAACCAGAATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAGGATGTCCAGTGCCCAATTTGCCTTGGCATTATTAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTTGGGAACAATGAATGCCCTGCTTGCCGAACACATTGTGCCAGTCGCCGTTCTTTGAGAGATGATCCGAAATATGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTACGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGGCAGTCTGAGGCACTAGTTAAGAGACGTAAAGATTCACCAAGTGTATTCGTGACAAGATCCCAGCGAAATCAACGAAATGCTTCTAGGAGACAAAATCAAGTGATTGATATTCAAGGATCTGAGGATAATGAGGAGGAAAATGACAATAACGAAAAGGACTCATCATCTGCTGATGAGCGGGGTACAGAGGCGAGGCAAAGAAGGAGAAAGAGATGGACCAGAGTTCGCACCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGATGTGCAGAAAGTGACTTGGATAACGGTAGAGAAAATCGAGGACTTTCAAGGCAGGTGTCAAAACCTCGAAAACTTACATGGGGAAGGGGTGGATTTAGAAGTCACACAAGGCATGGAAGTGGCAGTGGTAGTAGTAGCAAAACCTCTCGCAGTAGTCGAGTGTCTAAGATGGTTGATTTTCTCCGAAACTTGGATGAGAATGCTGATGAGTTAGATATCCATCTCATGCTTTATTCTCTGGGCAAACGAGGCGCACCAAGTTTGGAGAAGCCACACCTTTGCTGTCGCCCAACTTTGTCTGTCAAGAACCTTTGCGAATATGTTGCTCGCCAAACACCTGTGCCTGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCAGTGGCACAGATTTCGACAAGTCAACTGATGAGACTTCATCCTTGAAATGTGATGAGCTAACAACTCTGGTTATAGATCCATCTAAATATGAACTAGAAATTTTGCAGGGAGATGAATCTTTAGCAGGGATTAGATCTAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCGGAAAGGGGCACTATAG 1563 0.4575 MPAQKRPYPDTLDDADDSSNHLFPHRHPKHHRDRTLKPHHPDEDAAGAHKEEDEQEQEQGDAEQEDEEDEQQGAEEEDDDDEEEEEEDDDEDEDEGEGDEEDEEEGKHNDEDSDDTPSSDSEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDSPSVFVTRSQRNQRNASRRQNQVIDIQGSEDNEEENDNNEKDSSSADERGTEARQRRRKRWTRVRTSQPSSSMASPDGGCAESDLDNGRENRGLSRQVSKPRKLTWGRGGFRSHTRHGSGSGSSSKTSRSSRVSKMVDFLRNLDENADELDIHLMLYSLGKRGAPSLEKPHLCCRPTLSVKNLCEYVARQTPVPVEEVEILAVKGCSGTDFDKSTDETSSLKCDELTTLVIDPSKYELEILQGDESLAGIRSKCISKREHLILAYRRKGAL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0973 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 44 517 - -
Amo18g0973 520 MobiDBLite consensus disorder prediction 56 119 - -
Amo18g0973 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 211 IPR013083 -
Amo18g0973 520 MobiDBLite consensus disorder prediction 9 23 - -
Amo18g0973 520 PANTHER OS11G0578200 PROTEIN 44 517 IPR044592 -
Amo18g0973 520 ProSitePatterns Zinc finger RING-type signature. 157 166 IPR017907 -
Amo18g0973 520 MobiDBLite consensus disorder prediction 365 381 - -
Amo18g0973 520 SMART ring_2 141 180 IPR001841 -
Amo18g0973 520 MobiDBLite consensus disorder prediction 1 124 - -
Amo18g0973 520 MobiDBLite consensus disorder prediction 36 55 - -
Amo18g0973 520 ProSiteProfiles Zinc finger RING-type profile. 141 181 IPR001841 -
Amo18g0973 520 MobiDBLite consensus disorder prediction 239 381 - -
Amo18g0973 520 SUPERFAMILY RING/U-box 128 195 - -
Amo18g0973 520 MobiDBLite consensus disorder prediction 332 346 - -
Amo18g0973 520 Coils Coil 48 84 - -
Amo18g0973 520 Coils Coil 207 238 - -
Amo18g0973 520 MobiDBLite consensus disorder prediction 254 276 - -
Amo18g0973 520 CDD RING-HC_RING1_like 141 181 - -
Amo18g0973 520 Pfam Zinc finger, C3HC4 type (RING finger) 140 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0973 Amo-Chr18 15745836 15751557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0973 134 204 C3H Transcription Factor Family AT3G23060 35.135 4.27e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0973 K10695 - gmx:100776547 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0973 18 15745836 15751557 Amo08g1273 08 20811189 20816848 hybridization