Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0972 ATGGACCGGGGTGGTGGTGAAGACGCGCCGCTAGAGGCGAAGAGGGAGCCTAAGCCGGATGAAGATCATAATAATAATAATAAGAAGAAGAAGAAGAAAGAAGTGCCGGTGACATGGGTTAGCGGGAAGAAAGGTTCCGGTGGTGGCATGCGGTGTTGTCAAGCTGAGAAGTGCAAGGCGGATCTTGAGGAGGCAAGGCAGTACCATAGGAGGCACAGGGTGTGTGAGTACCATGCCAAGGCTCAGGTGGTTCTTGTTTCCGGCATTAGACAACGCTTCTGTCAGCAATGTAGCAGGTTCCATGAGATAGGTGAATTTGATGACACAAAAAGAAGTTGCCGGAGGCGTTTGGCCGGACACAACCAACGGCGAAGAAAGAACTGTGATTCTCAAGCAGAAGGGTCGAGGCGCAAAGGGATATGTCCTCGGTTGAAGAAGGACACTGCCTGTGGAGATGATAGGAGCAGAATTCAGATTGCAATCCAAGAGAGTGGAGCTTATAAACATTTCCAGATAAGATGA 522 0.4981 MDRGGGEDAPLEAKREPKPDEDHNNNNKKKKKKEVPVTWVSGKKGSGGGMRCCQAEKCKADLEEARQYHRRHRVCEYHAKAQVVLVSGIRQRFCQQCSRFHEIGEFDDTKRSCRRRLAGHNQRRRKNCDSQAEGSRRKGICPRLKKDTACGDDRSRIQIAIQESGAYKHFQIR* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0972 173 Gene3D - 44 114 IPR036893 GO:0003677|GO:0005634
Amo18g0972 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 173 IPR044817 GO:0003677
Amo18g0972 173 MobiDBLite consensus disorder prediction 1 41 - -
Amo18g0972 173 Pfam SBP domain 53 126 IPR004333 GO:0003677
Amo18g0972 173 MobiDBLite consensus disorder prediction 1 38 - -
Amo18g0972 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 35 173 - -
Amo18g0972 173 ProSiteProfiles Zinc finger SBP-type profile. 50 127 IPR004333 GO:0003677
Amo18g0972 173 SUPERFAMILY SBT domain 51 130 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0972 Amo-Chr18 15730606 15731784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0972 40 159 SBP-box Gene Family AT1G53160 55.200 4.77e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo18g0972 SBP 7.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0972 - - ccaj:109810441 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0972 18 15730606 15731784 Amo08g1270 08 20781986 20782757 hybridization