Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0970 GCTTCTGTTTTCGACATCTCGGGAATGAGATTTGACATGGTTCCCAGTGAAAGATTCAAGCTTTGGCTAAGAATTGCACTTGGGTGGTGGATTTTTCTACTGTTTCTTCCCTCTGTGACTGGTCTCAGACCCTTACGGGAAAGAACTCGTTCTTGGGGCGATGAGTGGCTTACAAGAAAAGATGAGACTGATAGTGGTCCATTTTCACAATGGAACATAACTGGAACTTATAGAGGGAGTTGGAAGTTTTCAGATGCCGCAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAACTGGTAATTCTGTGATTGAATTAGTTAGTACACCAACGAAGATAACTGGAGTACATTACGTTCAGGGGGTTATTATATTCCATGATGTGTTTGACAATGAATATAATGTTGGTGGTGCCCAGATCAGAGTGGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGGAGAATTGAATCAGGATGGAGATTATATTTTATCCAATCCATACCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCCCGAGATAAGATGTGGAGAAAGAAACATTCTCCAATGCATGACATGGAGAAACATTGTAATATTGAAATTGCTGCACAGCTTTCACGCTTACCATCAACCAAAAATGAAGGAGAACATGATCGATTTCACCTCGAAGGTTTGATGGAGAGTCCCTCCACGGATGATGATGGGGACTGTTTCTCACCTTTACTGTTAAATACAACTTCTGTCAACATTGAGGTGTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCTTTCTTGCAAGTTCTTCTACTGATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGGGCTGCTAAGGTTTCAATATTGTTGATTGGCCAGCAGGCGATAATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTCGTCTTTTCAATATTTGAGATGAGATATCTCCTCACCATCTGGAAGGCAAATAGGCCTTTGAGTAGCGGAGAAGGTTGGGAGGCAATGAGGCGCGAACTTTCCGTCTTATATAGCCGTTTCTATGGAATCCTGTTGGGAGGCATTCTCCTCATGTACGAGTTCCATCACCATTTGAAACCTATTCTTCTTCTTATATACTCCTTTTGGATACCTCAGATAATCACCAACGTTATCCGTGACTCGCGCAAGCCGCTGCATCCTCATTATATCCTCGGGATATCTGTTACTCGCCTAGCAATCCCGCTATATGTTTTTGGTTGCCCAAACAACTTCATGCGCATACAGCCGGACAAGAGCTGGTGTGTTTCGTTGGCTGCATTTATTGGCCTTCAAGCTTCAGTTCTTCTTCTGCAGCATTATCTCGGCTCACGGTGGTTCATCCCTCGCCAGATACTGCCCGAGAAGTACAGCTATTATAGGAGGTTTAATCAAGATGCAAGACACGCTATGGATTGTGTTATTTGCATGACATCCATTGATCTTAATCAACGGTCTAATGATTGTATGGTGACACCTTGTGATCATTTCTTTCACTCTGGTTGTCTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCTCGCTACCGCCTGCATAA 1713 0.4262 ASVFDISGMRFDMVPSERFKLWLRIALGWWIFLLFLPSVTGLRPLRERTRSWGDEWLTRKDETDSGPFSQWNITGTYRGSWKFSDAANGSSRFPDIRKTTGNSVIELVSTPTKITGVHYVQGVIIFHDVFDNEYNVGGAQIRVEGVYIWPFRQLRMVANSGKEGELNQDGDYILSNPYHLLGVFSSQVLQDSSRDKMWRKKHSPMHDMEKHCNIEIAAQLSRLPSTKNEGEHDRFHLEGLMESPSTDDDGDCFSPLLLNTTSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILLIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLTIWKANRPLSSGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHHHLKPILLLIYSFWIPQIITNVIRDSRKPLHPHYILGISVTRLAIPLYVFGCPNNFMRIQPDKSWCVSLAAFIGLQASVLLLQHYLGSRWFIPRQILPEKYSYYRRFNQDARHAMDCVICMTSIDLNQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0970 570 ProSiteProfiles Zinc finger RING-type profile. 520 564 IPR001841 -
Amo18g0970 570 SMART ringv_2 519 564 IPR011016 GO:0008270
Amo18g0970 570 SUPERFAMILY RING/U-box 501 568 - -
Amo18g0970 570 Pfam Ring finger domain 519 564 IPR001841 -
Amo18g0970 570 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 11 570 - -
Amo18g0970 570 SMART ring_2 520 563 IPR001841 -
Amo18g0970 570 PANTHER RING ZINC FINGER PROTEIN 11 570 - -
Amo18g0970 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 570 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0970 Amo-Chr18 15718206 15723649 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0970 520 567 C3H Transcription Factor Family AT4G12190 39.583 4.38e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0970 K23788 - gmx:100785460 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0970 18 15718206 15723649 Amo08g1266 08 20737081 20745270 hybridization