Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0936 ATGGGAAGAGTACCTTGTTGTGACAAGAATAATGGACTCAAGAGAGGTCCATGGACACCAGAGGAAGATCTCAAGCTTGTCCACTACATCCAGAAACATGGACCTGGAAACTGGAGATCCCTCCCCAAGAATGCCGGTCTGCAAAGATGTGGCAAGAGTTGCCGCCTTAGATGGACAAATTACCTAAGACCTGATATCAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAAACCATCATCCAGCTTCACAGCTTCATGGGGAACAAGTGGTCTGCAATAGCTGCGCGATTGCCAGGAAGAACGGACAATGAGATAAAGAACTACTGGAACACACACATAAGGAAAAGGCTGCTAAGAATGGGGATTGATCCGGTTACTCATGCGCCGCGACTRGATCTACTGGACATGTCCTCTGTATTAAGATCAGCTTTAGGGAACCCCTCATCAATTCTGAATCTGCAAGGCTTGTTGGTCAACCCTGAATTGCTWAAGCTTGTAGCCACTGCATCCCTATTATCTCATCAGACTCAGAATCTACCACAACTGATCAATGCTGGGGCGAATTCCGATTCTCAACAACTACTGAATCATCAGTTTCAGATACCAAATCAAACCACCAATGTGATTGACTTGGTGAGTAATAATAATTGTAACGCGATGAATAATTCATTTGCTACTACTCCTTCTTCATATCTTGGGGAGAATTTGAATGTGTCTCAGCAAAACCAAGTTGATTTGTTAGAGAATGAATTGTTACAGTACATAAACAATGGTAGTAGTGATCAAAACATGGGGTATGAATCGGTTATGTCGACGCCTCTGTCGACCCCAACAACAACGCCTTTGACTTCATCATCAACTTATGTGAATAGCAGCAACACAGAACAGGAAGAGAGGGACACCTATTGCAGTGAGCTTTTCAAATTAGAGATTCCAGAGAGTCTTGATATTAATGACTTCTTGTAA 966 0.4275 MGRVPCCDKNNGLKRGPWTPEEDLKLVHYIQKHGPGNWRSLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSFMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSVLRSALGNPSSILNLQGLLVNPELLKLVATASLLSHQTQNLPQLINAGANSDSQQLLNHQFQIPNQTTNVIDLVSNNNCNAMNNSFATTPSSYLGENLNVSQQNQVDLLENELLQYINNGSSDQNMGYESVMSTPLSTPTTTPLTSSSTYVNSSNTEQEERDTYCSELFKLEIPESLDINDFL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0936 321 PANTHER TRANSCRIPTION FACTOR MYB41 1 316 - -
Amo18g0936 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Amo18g0936 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 316 - -
Amo18g0936 321 Gene3D - 70 117 - -
Amo18g0936 321 Coils Coil 237 257 - -
Amo18g0936 321 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Amo18g0936 321 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Amo18g0936 321 Gene3D - 15 67 - -
Amo18g0936 321 CDD SANT 70 113 IPR001005 -
Amo18g0936 321 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Amo18g0936 321 SMART sant 67 115 IPR001005 -
Amo18g0936 321 SMART sant 14 64 IPR001005 -
Amo18g0936 321 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Amo18g0936 321 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Amo18g0936 321 CDD SANT 17 62 IPR001005 -
Amo18g0936 321 MobiDBLite consensus disorder prediction 270 297 - -
Amo18g0936 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0936 Amo-Chr18 14124765 14125884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0936 1 321 MYB Transcription Factor Family AT4G21440 52.247 4.17e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo18g0936 Myb_DNA-binding 5.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0936 K09422 - gmx:102668351 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0936 18 14124765 14125884 Amo08g1120 08 18740974 18742146 hybridization
Amo18g0936 18 14124765 14125884 Amo13g1960 13 29681046 29683124 PCT
Amo18g0936 18 14124765 14125884 Amo03g0664 03 12235743 12237820 PCT
Amo13g1960 13 29681046 29683124 Amo18g0936 18 14124765 14125884 PCT
Amo03g0664 03 12235743 12237820 Amo18g0936 18 14124765 14125884 PCT