Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0928 ATGGTGAGAACCCCTTTGTGTGACAAGAGTGGAATGAGGAAGGGCACGTGGACAGCTGAGGAAGACAAGAAGTTGGTCGCTTATGTTACTAGGTATGGTTGCTGGAATTGGCGTCTTCTCCCAAAGTTTGCAGGTCTTGAAAGGTGTGGCAAGAGTTGCAGACTTAGGTGGATGAACTACCTCAGACCCAACATCAAAAGAGGCAACTACACTCAAGAAGAAGAGGATACTATCATCACACTTCACCAAAACCTTGGCAATAGATGGTCCCTAATTGCGGCGAATTTACCAGGAAGAACTGATAACGAGATAAAGAATCACTGGCACACTGTTCTGAAGAAGCGTATTCAAGACAAGTCGTCGTCCTCCTCCTCCTCGTCGTCATCAGGCACAGGCAAAGGTAGTAGAACCGGAAAAGCTAAAGCTTCTTCCAAGGTAAAGAATAATAATAATAATAATCATGACTCCCCAACAACAATAATGGAACAAGATTTCAATAGTGACTCATCATCAGAGAACAGCAATAATAACATTGGTGGTAGTTGTGATGATCGTCATAATAATAGTTCATTGTCTCCACAACCATCCTCTAGCGGTTTCTCTTGCATAACAACAGATACTGAAACCGCCGCTATAAACCATGAGGATAATAATTTAATTATTCTAGAGAATAATAATAATGATTACGGAGAGCTTGGTTTCTTTGATGCATATGATGAGCCAGTGAGTGAAGATTTCTGGACAGAACCATATCTGACTGACTTTTCCTATGTCCCACCCAGTAGTGAAGAATACTTTCTTAACCCTATTTGGGATATAGAATTCTGGGGCCAGAATAGCTTATACCTGGAATGA 855 0.414 MVRTPLCDKSGMRKGTWTAEEDKKLVAYVTRYGCWNWRLLPKFAGLERCGKSCRLRWMNYLRPNIKRGNYTQEEEDTIITLHQNLGNRWSLIAANLPGRTDNEIKNHWHTVLKKRIQDKSSSSSSSSSSGTGKGSRTGKAKASSKVKNNNNNNHDSPTTIMEQDFNSDSSSENSNNNIGGSCDDRHNNSSLSPQPSSSGFSCITTDTETAAINHEDNNLIILENNNNDYGELGFFDAYDEPVSEDFWTEPYLTDFSYVPPSSEEYFLNPIWDIEFWGQNSLYLE* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0928 284 CDD SANT 69 112 IPR001005 -
Amo18g0928 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo18g0928 284 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo18g0928 284 CDD SANT 16 61 IPR001005 -
Amo18g0928 284 Gene3D - 68 164 - -
Amo18g0928 284 SMART sant 66 114 IPR001005 -
Amo18g0928 284 SMART sant 13 63 IPR001005 -
Amo18g0928 284 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo18g0928 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo18g0928 284 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 207 - -
Amo18g0928 284 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 207 - -
Amo18g0928 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo18g0928 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo18g0928 284 Gene3D - 14 66 - -
Amo18g0928 284 MobiDBLite consensus disorder prediction 114 202 - -
Amo18g0928 284 MobiDBLite consensus disorder prediction 117 202 - -
Amo18g0928 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0928 Amo-Chr18 13947617 13948949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0928 1 159 MYB Transcription Factor Family AT1G06180 55.814 2.03e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo18g0928 Myb_DNA-binding 8.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0928 K09422 - gmx:100778518 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0928 18 13947617 13948949 Amo18g0928 18 13947617 13948949 ECH
Amo18g0928 18 13947617 13948949 Amo08g1129 08 18816278 18818777 hybridization
Amo18g0928 18 13947617 13948949 Amo03g0677 03 12474453 12476301 PCT
Amo03g0678 03 12500948 12502864 Amo18g0928 18 13947617 13948949 PCT