Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0908 ATGCATAAAACTACCAAACCTCCATTATTGACCTTAACAGGTAACATGAGAACAATCACTTTCCTCTTCCTCTTCTATCTGCAGTTGCCATGCTCCTTTAAGTCCTGTTTGGCAAGAGATTTCTTAAATCCTGGCCAAAACATAACTGGAACTACAAGTGTTCTTGTTTCAGCTGGACAAAGATTTGTATTAGGCTTCTTTTCTCCTGCTGGAAACCCAACAGAGACTTACCTTGGAATATGGTACTACCAATCACAGACCTTCTCATCAGAACTGCCGACAGTGGTATGGGTGGCCAATAGAGACAAACCAATCTTGAATTCCCATGTTGGAGTGTTCCAAATTGCAGGTGATGGAAACCTTGTGGTCAAAGACAAAGACGGATCATCAAGCAAGAGTTATTACTGGTCCTCTGAACTTGAAGGGTCTTCATCAAGAAACAGGACAGTGAAGCTAATGGATTCAGGGAACCTAGTATTGTTCCAAAACGATGAGAATATATGGCAGAGTTTCCAACACCCCACAGACACGTTTCTTCCGGGTATGAAAATGGACACAACCATGGAACTAACTTGTTGGAGTGGTGACAGTGATCCACGACCTGGGAACTTCACCTTCAAGATCATGTCTCAAACAGCAGGGGACAACCCTCGTTACATAATCTTGAAAAACAATAAGCTCTATTGGGAGAGTAGTGGACAAAACGAAGACTTGAATCCAGATTCAGAGTTTGATGCTGTAGCTTACTTTTTGAGCAACTTCAGCTCTTCAACGAAACAAGGTAATCTGAGTCCTACGAACTACGAGAATAAAAGGCTATTGATGAATTCAACTGGGGAGCTTCAGTTTCGAACAAGAGAGGGTTTCCAAGGTGATTGGTCCTTTTTCTGGAAAGCTCCACAGAGCTTCTGCGACTCATACAATGCTTGCGGCAACTTCTCCACCTGCAAAGACAACAACGGGGAGCGATGCAAGTGTTTACCGGGATTTAACCAAGTTAGCGGAAGTAACTATTGTGCTAGAAAATCAGCGGCATCATCGTGGTGTGGAGAAGGCATAAGGTTCTTGAATTTGGTGATGGTGAAAGTGCGAAACCCGGATATATATTACACGGAAGCAAATGAAAGTGATTGCAAGAACAAGTGCCTTCAAATGTGCCCCAAGTGCCAGGCCTACTCTTATAGTGTTCCTCAGGACACTACAAGGCGTGACCTTAGTTTCTCTACTTGCAGGATTTGGACACACGATTTAATTACACTCCAAGAAGGATACTTTGGCAGAAATCTCTCTGTCCGGGTAGATATATCAGACATAGAAGCAACTCCAAGAAGTTGTGAGCCTTGCGGAGCAAACATAGTCCCTTATCCGTTGAGCACTGGACGGAATTGTGGTGATCCACTGTACTTCACTTTCAGTTGCAACCGCTCAACAGGAGACCTTAGTTTCGTACCTACTACGACAAGTGACGGTTACACAGTTATTAGCATTGACGCAGATTCTAGAAAGTTCGTCATCAAAGTCACTTCTGCGGAAACTTATTGTAATCTGCAAACTCGTAACGACAAAACTCTGCAAATTCATTTTCCGTTTAACGTGACTAACGAGTGCCGCACAGAAGATGAAGTAGAGGTTACTTGGCTACCACCTTCTGAACCCATCTGCAATGAATCAGTGGATTGTAAGGGTTGGAACCACTCAACTTGTGAAAAAACAGGAGATTCTAACAGGTGTCTTTGCAATTCAAACTATCGTTGGAATAACGCTTCTCTTAATTGTGATAGTAACGAAGCAATAGCCATTGCTGGTGGTACAGAACAAAAGGTAAGAAAAGAAAACTCAAAAAGCCAAAAGTCTTTGATTATCGGAGTAACTCTTGGAAGTGTGGTTGTTCTGGCATGTGCTGTAGTTTCTGCTTATTTATGTAGAAGGAAAATAACTTACAAAAAAGACAAGGATAAAATTCAGAGAAATCGAGGGAGATTTTATGACAGTGAGAGACATGTGAAGGATTTGATGGAGGTTGAAGGATTTGAAGAAAAAGACCATGAAGACATAGAAGTACCATACTTTGATTTTGAGAGCATACTAATAGCAACAGATAACTTCTCTGATGCAAATAAGCTTGGACGAGGTGGTTATGGACCGGTCTACAAGGGTAAGCTTCAAGATGAAGTTGTTGCAGTAAAACGGCTTTCAAGTATTTCYTCACAAGGTTTACTTGAGTTTAAGAATGAGGTTGTTTTGATAGCCAAATTACAGCATCGAAATCTTGTSAGGCTAAGAGGCTATTGCATCAAAGGAGAAGAAAAGATTTTACTCTATGAGTATATGCCTAACAAAAGCTTAGACTCATTTATTTTCGATCCTAAACAAAGTGTACATTTGGATTGGCAAATACGGTTTGACATCATTTTAGGAGTTGCTCGAGGAATATTATACCTTCATCAAGACTCCAGACTAAGAGTAATTCATCGAGATTTAAAAACTAGCAACATTCTTTTGGATAAAATGATGCAACCTAAAATTTCAGATTTTGGCTTGGCAAGAATAGTAGGAGGCAAAGAAACTGAGACGAACACAGAGAGAGTAGTGGGTACTTATGGATATATGTCTCCTGAATATGCATTAGATGGACTCTTTTCGACCAAATCTGATGTTTTCAGCTTTGGTGTAGTCTTATTAGAGATTATAAGTGGAAAAAAGAACACTGGATTTTATCAATCCAGCCAAGTTCCAAGCCTTTTAGGCTACGCCTGGAAACTGTGGACAGAGAATAAGTTGATAGATTTAATGTACATGAGCTTAGTAGAAAGTTGCACTGAGAATCAGTTTATTAGGTGTGCACATGTTGCACTCTTGTGTGTCCAAGATGAACCAGGTGACCGACCAAGCATGTCAAGTGTAGTGACCATGCTCGATAGTGAGACTTCAACCCTTCCAACCCCAAAACAACCAACATTTTTTGCCAGTAGAGGCCAACCCACAACTTCTTCCAGTAAATCAACAGAAATAAATATGCAATTTGAGAGTACCACTCATTATCAGGAAGGTCGATAG 3057 0.4079 MHKTTKPPLLTLTGNMRTITFLFLFYLQLPCSFKSCLARDFLNPGQNITGTTSVLVSAGQRFVLGFFSPAGNPTETYLGIWYYQSQTFSSELPTVVWVANRDKPILNSHVGVFQIAGDGNLVVKDKDGSSSKSYYWSSELEGSSSRNRTVKLMDSGNLVLFQNDENIWQSFQHPTDTFLPGMKMDTTMELTCWSGDSDPRPGNFTFKIMSQTAGDNPRYIILKNNKLYWESSGQNEDLNPDSEFDAVAYFLSNFSSSTKQGNLSPTNYENKRLLMNSTGELQFRTREGFQGDWSFFWKAPQSFCDSYNACGNFSTCKDNNGERCKCLPGFNQVSGSNYCARKSAASSWCGEGIRFLNLVMVKVRNPDIYYTEANESDCKNKCLQMCPKCQAYSYSVPQDTTRRDLSFSTCRIWTHDLITLQEGYFGRNLSVRVDISDIEATPRSCEPCGANIVPYPLSTGRNCGDPLYFTFSCNRSTGDLSFVPTTTSDGYTVISIDADSRKFVIKVTSAETYCNLQTRNDKTLQIHFPFNVTNECRTEDEVEVTWLPPSEPICNESVDCKGWNHSTCEKTGDSNRCLCNSNYRWNNASLNCDSNEAIAIAGGTEQKVRKENSKSQKSLIIGVTLGSVVVLACAVVSAYLCRRKITYKKDKDKIQRNRGRFYDSERHVKDLMEVEGFEEKDHEDIEVPYFDFESILIATDNFSDANKLGRGGYGPVYKGKLQDEVVAVKRLSSISSQGLLEFKNEVVLIAKLQHRNLVRLRGYCIKGEEKILLYEYMPNKSLDSFIFDPKQSVHLDWQIRFDIILGVARGILYLHQDSRLRVIHRDLKTSNILLDKMMQPKISDFGLARIVGGKETETNTERVVGTYGYMSPEYALDGLFSTKSDVFSFGVVLLEIISGKKNTGFYQSSQVPSLLGYAWKLWTENKLIDLMYMSLVESCTENQFIRCAHVALLCVQDEPGDRPSMSSVVTMLDSETSTLPTPKQPTFFASRGQPTTSSSKSTEINMQFESTTHYQEGR* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0908 1018 MobiDBLite consensus disorder prediction 973 1018 - -
Amo18g0908 1018 ProSiteProfiles PAN/Apple domain profile. 349 429 IPR003609 -
Amo18g0908 1018 Pfam D-mannose binding lectin 94 187 IPR001480 -
Amo18g0908 1018 Gene3D - 35 172 IPR036426 -
Amo18g0908 1018 ProSitePatterns EGF-like domain signature 2. 324 339 IPR000742 -
Amo18g0908 1018 CDD B_lectin 47 174 IPR001480 -
Amo18g0908 1018 SUPERFAMILY alpha-D-mannose-specific plant lectins 94 232 IPR036426 -
Amo18g0908 1018 Gene3D Transferase(Phosphotransferase) domain 1 777 983 - -
Amo18g0908 1018 SMART blect_4 46 174 IPR001480 -
Amo18g0908 1018 ProSiteProfiles Protein kinase domain profile. 702 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0908 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Amo18g0908 1018 Pfam S-locus glycoprotein domain 244 332 IPR000858 GO:0048544
Amo18g0908 1018 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 1007 - -
Amo18g0908 1018 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 37 1007 - -
Amo18g0908 1018 CDD STKc_IRAK 708 973 - -
Amo18g0908 1018 SMART serkin_6 702 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0908 1018 SUPERFAMILY Protein kinase-like (PK-like) 684 1012 IPR011009 -
Amo18g0908 1018 ProSiteProfiles Bulb-type lectin domain profile. 39 173 IPR001480 -
Amo18g0908 1018 Gene3D Phosphorylase Kinase; domain 1 663 776 - -
Amo18g0908 1018 Pfam Protein tyrosine and serine/threonine kinase 706 972 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0908 Amo-Chr18 13425466 13430196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0908 690 988 Receptor kinase-like Gene Family AT4G23140 57.843 1.58e-120 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g0908 PK_Tyr_Ser-Thr 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0908 - - aip:107612581 2002.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0908 18 13425466 13430196 Amo08g1138 08 18932691 18958910 hybridization
Amo13g1920 13 28900383 28904956 Amo18g0908 18 13425466 13430196 PCT