Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0896 ATGCACGTAATGCATAGCATGAAAGCTGAGCTAAAAGGAGCATCCTCTATCTCCTTCCAAAACCACAGCCTCTTCAACACAGCACCACACAGTTCACTCACCGGAGCACTCAAAGGGTGTCTCGGAAGCCTCGACGGCGCGTGCATCGAGAAGCTTCTTCTCCACTGCGCAAGCGCCTTGGAGAGCAACGATGTAACCTTGGCTCAACAAGTGATGTGGGTCCTCAACAACGTTGCTTCACCAACCGGTGACACAAATCAAAGGCTCACATCATGGTTCCTCAGAGCACTGATCTCTAGGGCTTCAAGGATTTGCCCTACAGCCTTGAGTTTCAAGGGGAGTAGCAACAACATTCAGAGGAGGTTGATGACGGTTACCGAGCTAGCAGGATACGTGGATCTCATTCCATGGCACAGGTTTGGGTTTTGTGCTTCAAATAATGAGATTTTCAAAGCAATTTTAGGGTTCCAAAGGGTACATATCTTAGACTTTAGCATCACTCATTGTATGCAATGGCCTACTTTCATTGATGCTTTGGCCAAAAGCCCTGAAGGTCCTCCTTCACTTAGAATCACTGTCCCATCTTTTAGGCCACCGGTGCCTCCATTGGTGAATGTATCAACTCATGAGGTTGGCCTTCGGTTGGCGAATTTCGCGAAGTTTAGGGATGTCCCTTTTGAATTCAATGTCATAGGGAACAATTTAGGTCCCTTATTAGCACCTAATAATTCTGAATTAAGCAATGAATCAACTAGTTTTCATGTTGAGTCATTGCTGAGTCTATTGAATCCTAGTGTGCTAAACCTTAGGGATGATGAGGCTTTGGTCATAAATTGTCAAAATTGGCTTCGTTATTTGTCTGATGATAGAAAGGGAAACCACCGATGCCTTTCTCTCCGTGACGCTTTTTTGAGTTTAATTAAAGGTCTTAACCCTCAGATTGTGGTTTTGGTGGATGAGGATTGTGATCTTAGTTCACCAAGCCTCACATCAAGAATTGCAACATGTTTCAACCATCTGTGGATACCCTTTGATGCATTGGAGACTTTCTTGCCTAAGGACAGTTGCCAGAGGACAGAGTTCGAATCCGACATTGGACAGAAGATTGAGAACATCATAGGATATGAAGGGCATCATAGGATAGAGAGGTTGGAGTCAGGGATGCAGATGTGCCAGAGAATGAAGAATGCTGGTTACTTGAGCCTCCCATTTTGTGATGAAACGGTTATGGAAGTTAAGGGTTTGCTTGATGAGCATGCTAGTGGATGGGGGATGAAGAGGGAAGAAGGCATGTTGGTTCTCACATGGAAAGGAAACAGCTGTGTCTATGCCACTGCTTGGGTCCCCAGTGAAACCAGGGATCCTATTGGTTTCGATGCAACTATGGCATAA 1392 0.4519 MHVMHSMKAELKGASSISFQNHSLFNTAPHSSLTGALKGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPTGDTNQRLTSWFLRALISRASRICPTALSFKGSSNNIQRRLMTVTELAGYVDLIPWHRFGFCASNNEIFKAILGFQRVHILDFSITHCMQWPTFIDALAKSPEGPPSLRITVPSFRPPVPPLVNVSTHEVGLRLANFAKFRDVPFEFNVIGNNLGPLLAPNNSELSNESTSFHVESLLSLLNPSVLNLRDDEALVINCQNWLRYLSDDRKGNHRCLSLRDAFLSLIKGLNPQIVVLVDEDCDLSSPSLTSRIATCFNHLWIPFDALETFLPKDSCQRTEFESDIGQKIENIIGYEGHHRIERLESGMQMCQRMKNAGYLSLPFCDETVMEVKGLLDEHASGWGMKREEGMLVLTWKGNSCVYATAWVPSETRDPIGFDATMA* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0896 463 Pfam GRAS domain family 50 447 IPR005202 -
Amo18g0896 463 PANTHER OS05G0500600 PROTEIN 8 449 - -
Amo18g0896 463 ProSiteProfiles GRAS family profile. 40 448 IPR005202 -
Amo18g0896 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 449 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0896 Amo-Chr18 13187369 13189609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0896 37 449 GRAS Transcription Factor Family AT3G49950 44.893 9.29e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo18g0896 GRAS 4.2e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0896 - - gmx:100802093 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0896 18 13187369 13189609 Amo18g0896 18 13187369 13189609 ECH
Amo18g0896 18 13187369 13189609 Amo08g1149 08 19120127 19121518 hybridization