Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0891 ATGATATCCATGGAGCCCTACAGCATAGACCCCATGTTTTCAGGAATGAGCCTCCAATCACTCCTAAACCTCAACCCCTCCCTCCTCTCCTTCCTCACCGACCACCCTCCACAACCACAACTACCAAACCACCTCACTCTTCACCCCACTCTTGAACCCTACTTCAACTTCATCCCAAAACGCCCCCGCCTCACCTACTCTTCGTGTTCATCATCGTCATCGTCTCCGCCGTCCTCCCTCCGCGCAAAACCCCTTCCTCCGAAGAGCAACTTTGCTCGCCAGAGGAGGCAGAAGCTCAGCGAGAAGACTCGCTGCCTCCAGAAGTTGATGCCATGGGACAAGAAGATGGATCAGGCCACACTTTTCGAACAAGCCTACAGCTATGTTAAGTTCTTGCAGGCTCAGGTCTCCGTTCTTCAATCCATGCCCTACCACGCACCACCGTCACCCTCCTTCAACAATGGCGGCGGCTGTGTGTTCGGGTTCGGCGACTTGGAGAGGCTGARCAGGAACCAGTTGCTGCAGGTGCTGGTGAACTCTCCGGTGGCGCAGACGGTGATGTCGTCGAAGGGTTTGTGCGTCTTCTCAATGGAGCAGTTAGGGTTGCTGACGAAACTCTCGGAGCGGAGGCTTCTCCTTCAGAATATGAACGCCAACATGAACATGGTGTCTGATTCAAAACCTTTCTTCAACTAA 696 0.5374 MISMEPYSIDPMFSGMSLQSLLNLNPSLLSFLTDHPPQPQLPNHLTLHPTLEPYFNFIPKRPRLTYSSCSSSSSSPPSSLRAKPLPPKSNFARQRRQKLSEKTRCLQKLMPWDKKMDQATLFEQAYSYVKFLQAQVSVLQSMPYHAPPSPSFNNGGGCVFGFGDLERLXRNQLLQVLVNSPVAQTVMSSKGLCVFSMEQLGLLTKLSERRLLLQNMNANMNMVSDSKPFFN* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0891 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 145 IPR036638 GO:0046983
Amo18g0891 231 SMART finulus 89 138 IPR011598 GO:0046983
Amo18g0891 231 PANTHER TRANSCRIPTION FACTOR BHLH117 46 223 - -
Amo18g0891 231 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 46 223 IPR045843 GO:0003700|GO:0006355
Amo18g0891 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Amo18g0891 231 Gene3D - 87 145 IPR036638 GO:0046983
Amo18g0891 231 MobiDBLite consensus disorder prediction 68 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0891 Amo-Chr18 13055902 13056597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0891 95 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 46.018 3.05e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0891 - - aprc:113855910 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0891 18 13055902 13056597 Amo08g1151 08 19189499 19190194 hybridization