Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0884 ATGGACATAGATTCTTCAGGAGGCACATCCAATTGGCTCTACGATTATGGCTTTGATAACATCTCTGTGGCAGACTTCATGGCTCCAGACTCTGCTGCTTTCACCTGGCTGCCTCAACCTCAGCCTCACACCAATTTCAAGCCTCCTTCTTCCAATATCAGCTTGGAAATGGAATACTCAGTGGATTCAATTGTGCTGGAAGGTGGCCCTTCAAAACGGTTGAGGACTGAATCATGTGCATCTGGAACCAAGGCATGTCGAGAGAAATTGCGAAGGGACAAACTGAATGAGAGGTTTCTGGAACTGAGTTCCATCTTGGAGCCTGGTAGCATGCAGCCCAAAACCGACAAGGTTGCCATATTAAGTGATGCCGTCCGAGTCGTAAACCAATTAAGAGATGAAGCAGAGAAGCTGAAGGAAATGAATGATGAAATGCTTGAAAAAATTAAAGAGCTCAAGGCTGAGAAGAATGAGCTTCGGGATGAGAAAAATAGGCTCAAGGTAGAGAGAGAGAAGTTGGAGCAGCAATTCAAGATGACAAATGTTCAGCCAAGCTTCCTCCATCATGCTCCGGCCGCCACGAAAGCACAAGGTGCTAGCCAAAAGCTGATACCCTTCATAGGTTACCCTGGCATAGCCATGTGGCAGTTTATGCCCCCAGCTGCAGTTGATACATCAAAGGATCATCTCCTTCGTCCACCAGTGGCATAA 711 0.4684 MDIDSSGGTSNWLYDYGFDNISVADFMAPDSAAFTWLPQPQPHTNFKPPSSNISLEMEYSVDSIVLEGGPSKRLRTESCASGTKACREKLRRDKLNERFLELSSILEPGSMQPKTDKVAILSDAVRVVNQLRDEAEKLKEMNDEMLEKIKELKAEKNELRDEKNRLKVEREKLEQQFKMTNVQPSFLHHAPAATKAQGASQKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0884 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 131 IPR011598 GO:0046983
Amo18g0884 236 Gene3D - 81 160 IPR036638 GO:0046983
Amo18g0884 236 CDD bHLH_AtILR3_like 84 160 - -
Amo18g0884 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
Amo18g0884 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Amo18g0884 236 Pfam Helix-loop-helix DNA-binding domain 83 131 IPR011598 GO:0046983
Amo18g0884 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 145 IPR036638 GO:0046983
Amo18g0884 236 SMART finulus 85 137 IPR011598 GO:0046983
Amo18g0884 236 Coils Coil 121 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0884 Amo-Chr18 12990302 12992338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0884 64 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51070 61.236 6.59e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo18g0884 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0884 - - aip:107613798 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0884 18 12990302 12992338 Amo18g0884 18 12990302 12992338 ECH
Amo18g0884 18 12990302 12992338 Amo08g1160 08 19245547 19247616 hybridization