Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0874 ATGAACGACCTTCTTACTGATTCGTTTGCTGATGAAGGTAATCATGGTCAGCCTTCTAGACAAGGTGATATTGAAATGGGAATGCAGGTTCAGAGAAGCAACTCTGATCTGGGAATGGAAGCTTTTAATAAGCAGATCCATGAGGTCGACAAACAAATCGATAAGCTCTCTGGGCTACTTCAAAAGCTAAAGGAAGCTAATGAAGAATCAAAAGCCGTTACAAAAGCATCTGCTATGAAAGCTATCAAGAAGAGAATGGAGAAGGATATTGATGAAGTTGGAAAGATTGCACATGGTGTCAAAACAAAAATAGAAGCTATAAACAGAGATAACTTAAACAACAGAAAAAAGCCTGGTTGTGAGAAGGGAACGGGTATTGACAGAGCGAGGATGAATATGACAAATGCCTTAACTAAAAGGTTCAAGGATCTAATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTTGAGAGAAGAGTTATTACAGTCACTGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATTGAAACTGGAAATAGTGAACAAATCTTCCAGAAGGCAATTTTAGAAGCAGGCCGAGGACAGGTTGTAAGCACAGTAGAAGAAATTCAGGAGAGACATGATGCTGTGAAAGAAATTGAGAAAAAGCTTCTTGATTTGCACCAGATTTATCTCGACATGGCAGTCTTGGTTGATGCTCAGGGAGAGATTTTAGACAACATCGAAAGCCAGGTTTGTTCATGCTTCCTCACAACCTCGGTTTTTCTGTCTGTATATTTGTATGTAGAGTGCAGGCGATGTCTAGTTCAGTTTGCGATAATGAGAGCCTTGTTCAGGTCAACAACGCAGTCGATCATGTCCAGAGGGGGACAACGGCACTTCAAGGTGCTAAGAAACTCCAGAAGAACACTCGAAAATGGACGTGCATCGCCATCCTTATACTATTGA 975 0.4082 MNDLLTDSFADEGNHGQPSRQGDIEMGMQVQRSNSDLGMEAFNKQIHEVDKQIDKLSGLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKTKIEAINRDNLNNRKKPGCEKGTGIDRARMNMTNALTKRFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVCSCFLTTSVFLSVYLYVECRRCLVQFAIMRALFRSTTQSIMSRGGQRHFKVLRNSRRTLENGRASPSLYY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0874 324 SMART tSNARE_6 204 263 IPR000727 -
Amo18g0874 324 MobiDBLite consensus disorder prediction 1 25 - -
Amo18g0874 324 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Amo18g0874 324 PANTHER SYNTAXIN 12 256 IPR045242 -
Amo18g0874 324 CDD SNARE_syntaxin1-like 208 254 - -
Amo18g0874 324 SMART SynN_4 34 160 IPR006011 GO:0016020
Amo18g0874 324 Gene3D - 35 240 - -
Amo18g0874 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 254 IPR000727 -
Amo18g0874 324 Coils Coil 46 76 - -
Amo18g0874 324 CDD SynN 39 196 IPR006011 GO:0016020
Amo18g0874 324 SUPERFAMILY t-snare proteins 37 256 IPR010989 GO:0016020|GO:0016192
Amo18g0874 324 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 12 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0874 Amo-Chr18 12807992 12811682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0874 1 257 SNARE and Associated Proteins AT3G03800 61.479 2.11e-104 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0874 K08486 - gmx:100800991 450.669