Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0871 ATGGAGGAGAGTAGGCTCATTCCTGCGGACTTTGATGAGGATCGTATATTTTATCTTCATGTTGATCCCCAAGCTGTTACACATGAGTTACCCTCCCTATTTTATAGGAAGTATAGGGAACTTCTTCGAGATAGGATGATTGTAATAGACATGAATGACAATCAAATTGAGCTATCATTGAGCAGAGGGTTTTCTACTGGCTACATACTCCATGGATTTCATAATTTGGTCACATGTTATGGACTCAGCCATGGTGGCTGGATGAAGTTACTGTACGTTGGGGAGGACATATTTGTTGTTATGAAGGTGAAGGACAGCTTCATGATGCAAAGAGATTTCTCATATCCAACTTCTAATGTTTTGCACAAAAATAAACCACCAGCCAATCCCCTTTCTGCCCAACAAATGCCACGAGTTTCGACTCCTTCAGATTTGGTTCGTTCGAACTATGCAGATATGCCAGTTCTAGAAGTTAATTTGCAAAATAGCTTTGTACAACAAACTCTACATAATCCCATTGCCACAATACCTTCCCCTGCTTCTAACGGGAACACCTCCGAGGTGAGAACTGCCTATAAGAAAGATCTTCAGCTCACAGGCTTCCAGGGACAGGATGGTTTCCTTAGTGCTTCTCCGCTGTCTAAGACTTTTCTTCAGAAAGACCTGGACCGCTCCGCTGCGAGCGCGTCACATACCATGCCTAACAAATGCAACAAATTTGGCCAGGATCCAGCCCAAGTTTCCCCACAGGCATCCCCATACTGCAATGGTACCATCAATCATGTTTGTTCCATTACTAAAGTACAAACTCACGTCCCCAAAAAAGCCGAACCGAACCAATCCACTACACCGTTAACCACTGCTGGCCCCGACTCAAACATTCAAGGACCTCATGTCTATCGTTTCCTCAAGCTTCTCACTTCCAACCAAGTTAACAACAGTTCCGTGATCATTCCCCTTAGATTTGCTGAGAGTGCATTTCCTAGCAGACACAACCATGTCAAGGTGATTATGGACAATGGCTCTTGCTACCGCATGGGGTTGAGGTGGAGCAAAAAAAAGAAAGCTGGGTTGTATCTTACGCGTGGTTGGAAGCTATTTGCTAAATACAATGGGTTGAAATCCGGTACTGTTTTGCAGTTTTCCGTTTTTACAAATGACGAGACGACGATGCATGTAAAGATCCTTAAGATGTGA 1197 0.4378 MEESRLIPADFDEDRIFYLHVDPQAVTHELPSLFYRKYRELLRDRMIVIDMNDNQIELSLSRGFSTGYILHGFHNLVTCYGLSHGGWMKLLYVGEDIFVVMKVKDSFMMQRDFSYPTSNVLHKNKPPANPLSAQQMPRVSTPSDLVRSNYADMPVLEVNLQNSFVQQTLHNPIATIPSPASNGNTSEVRTAYKKDLQLTGFQGQDGFLSASPLSKTFLQKDLDRSAASASHTMPNKCNKFGQDPAQVSPQASPYCNGTINHVCSITKVQTHVPKKAEPNQSTTPLTTAGPDSNIQGPHVYRFLKLLTSNQVNNSSVIIPLRFAESAFPSRHNHVKVIMDNGSCYRMGLRWSKKKKAGLYLTRGWKLFAKYNGLKSGTVLQFSVFTNDETTMHVKILKM* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0871 398 Gene3D - 292 398 IPR015300 -
Amo18g0871 398 SUPERFAMILY DNA-binding pseudobarrel domain 28 103 IPR015300 -
Amo18g0871 398 SUPERFAMILY DNA-binding pseudobarrel domain 297 395 IPR015300 -
Amo18g0871 398 SMART B3_2 302 398 IPR003340 GO:0003677
Amo18g0871 398 CDD B3_DNA 301 397 IPR003340 GO:0003677
Amo18g0871 398 ProSiteProfiles B3 DNA-binding domain profile. 301 398 IPR003340 GO:0003677
Amo18g0871 398 Pfam B3 DNA binding domain 302 396 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0871 Amo-Chr18 12752289 12753713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0871 302 391 REM Transcription Factor Family AT2G24700 27.778 1.42e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo18g0871 B3 3.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0871 - - ahf:112802011 716.842