Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0787 ATGGTCAAAATGACTTCCAAGAATAACAAGAATAATGAGGATGGTGAGTCTTGGAGAGATGATTTGAGAAAGGGGCCTTGGACGCCGAGAGAGGACGCCATGCTTATCGAGCTCGTAGAGAAGTACCGAGAACGTAATTGGAGTTTATTAGTTCAAAAGAATTCTGAGTTGAGGAGAAGTGGCCAAAGTTGTAGGCATAGATGGCTCGAACATTTAAAGCCTGGCTTGAAGAAGGGTCCTCTCTCTGAAGAAGAGGAGAAACTCATCGTTGATCTTCATTCTCAGTTTGGAAACAGATGGGCTCTAATAGCTACCAAGGTTCCTGGAAGATCAGGCAATGAAATCAAGTGTTTTTGGAATACAAGAATGAAGAAGCGCCCAAGAGAATGGTTACCAGAAGATCCTCCACAAATGCTTCAACAAGCACAACACTTTTCTTCATCAGCTTCATCATCGTCATTTAATTCGGTCTTAGCTTCATGTTATCCTAAAAATGATCTTAGTAGTGTTGAACTGCCGCCAAATATTTCTGCTGCAAATCCTCCACAAAATCATAATAAAAAATAA 567 0.4074 MVKMTSKNNKNNEDGESWRDDLRKGPWTPREDAMLIELVEKYRERNWSLLVQKNSELRRSGQSCRHRWLEHLKPGLKKGPLSEEEEKLIVDLHSQFGNRWALIATKVPGRSGNEIKCFWNTRMKKRPREWLPEDPPQMLQQAQHFSSSASSSSFNSVLASCYPKNDLSSVELPPNISAANPPQNHNKK* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0787 188 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 173 - -
Amo18g0787 188 MobiDBLite consensus disorder prediction 1 25 - -
Amo18g0787 188 CDD SANT 82 121 IPR001005 -
Amo18g0787 188 Gene3D - 80 148 - -
Amo18g0787 188 ProSiteProfiles Myb-like domain profile. 19 72 IPR001005 -
Amo18g0787 188 Pfam Myb-like DNA-binding domain 27 87 - -
Amo18g0787 188 SMART sant 23 74 IPR001005 -
Amo18g0787 188 SMART sant 77 125 IPR001005 -
Amo18g0787 188 MobiDBLite consensus disorder prediction 167 188 - -
Amo18g0787 188 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Amo18g0787 188 MobiDBLite consensus disorder prediction 170 188 - -
Amo18g0787 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 76 IPR017930 -
Amo18g0787 188 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 173 - -
Amo18g0787 188 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Amo18g0787 188 Gene3D - 24 77 - -
Amo18g0787 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Amo18g0787 188 MobiDBLite consensus disorder prediction 9 25 - -
Amo18g0787 188 CDD SANT 26 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0787 Amo-Chr18 11306783 11309020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0787 22 142 MYB Transcription Factor Family AT2G32460 55.372 1.71e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo18g0787 Myb_DNA-bind_6 7.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0787 K09422 - ahf:112771967 255.373