Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0783 ATGATCTCCAATAATAACAAGAACAATGAGGATGGTGAGTCTTGGAGAGATGATTTGAGAAAGGGGCCTTGGACGCCGAGAGAGGACGCCATACTTATCGAGCAGGTAGAGAAGTGTGGCAAAGGTAATTGGAGTTTAATTCGAAAGAATTCTGAGTTGAGGAGAAGTGGCAAAAGTTGTAGGCTTAGATGGTCGAACCATCTAAATCCTGACTTGAAGAAGGGTCCTTTCTCTGAAAAAGAGGAGAAAACCATTGATGATCTTCATGCTAAGTTTGGAAACAAATGGGCTCTAATGGCTACCAAGGTTCCTGGAAGATCAGACAATGACATAAAAAACTTTTGGAACACAAGAATGAAGAAGCGCCTAAGAGAATATCCTCCACAAATAACGGTTCAAGAAGCACAACACTTTTCTTCATCACCATTTTATTCGGTCTTAGCTTCATGTTACCCTAAAAATAATCTCAGTGTTGAACTACCTTCAAACATTTCTGCTGCCAATCCTCCACCAAATCATAATCAGAAACAACCTAATCAAAATTATTATTCTTCTTCTTCTTCCTCTTGCACCAATAATAATGCAAGTTTTATATTGCCATTAGCCCCTATGTCTCCTTATTGTAAGAGTAGTGGTTTATTGAATGATGTGGTGATGGAGGGTAATGCTCTTTGTCGCAAGGGAAAGTCAAAGATGGATGCAGCCATTGTTATTGTTAGGGAGGAAGAAGAATTAGCTGATAAGAGGAAAATTATTGAAGAAGGTGAAGAGCCACCATTGCCACCAGTTGGAACTAGTAAAGAGGAAGAAACAACCACCATTATTGCAACTCAAAGCTCTTCTCATCAATTGATTTCAACAGAGAAGAATGATAATGGAGGTTGTAACAATAACAAGGAGGCATTGAATAATTCTATGCCACAAATGGACGATGAATTGCTTAGCATACTTAAAAATTGTCCAATATATTCGCCAGTGCGAAAGTGGTACAAAGTTGATGATGATGAGGACTTCCCTGATGATGATGATGATGGATTTGAATCTTGGTAA 1050 0.3867 MISNNNKNNEDGESWRDDLRKGPWTPREDAILIEQVEKCGKGNWSLIRKNSELRRSGKSCRLRWSNHLNPDLKKGPFSEKEEKTIDDLHAKFGNKWALMATKVPGRSDNDIKNFWNTRMKKRLREYPPQITVQEAQHFSSSPFYSVLASCYPKNNLSVELPSNISAANPPPNHNQKQPNQNYYSSSSSSCTNNNASFILPLAPMSPYCKSSGLLNDVVMEGNALCRKGKSKMDAAIVIVREEEELADKRKIIEEGEEPPLPPVGTSKEEETTTIIATQSSSHQLISTEKNDNGGCNNNKEALNNSMPQMDDELLSILKNCPIYSPVRKWYKVDDDEDFPDDDDDGFESW* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0783 349 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Amo18g0783 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Amo18g0783 349 MobiDBLite consensus disorder prediction 162 187 - -
Amo18g0783 349 CDD SANT 76 117 IPR001005 -
Amo18g0783 349 MobiDBLite consensus disorder prediction 1 23 - -
Amo18g0783 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 72 IPR017930 -
Amo18g0783 349 CDD SANT 23 68 IPR001005 -
Amo18g0783 349 Pfam Myb-like DNA-binding domain 24 83 - -
Amo18g0783 349 Gene3D - 75 140 - -
Amo18g0783 349 Gene3D - 21 73 - -
Amo18g0783 349 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 200 - -
Amo18g0783 349 SMART sant 73 121 IPR001005 -
Amo18g0783 349 SMART sant 20 70 IPR001005 -
Amo18g0783 349 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Amo18g0783 349 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0783 Amo-Chr18 11242553 11245756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0783 19 137 MYB Transcription Factor Family AT2G32460 63.866 1.55e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo18g0783 Myb_DNA-bind_6 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0783 K09422 - ahf:112771967 589.726