Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0761 ATGGAGGGATCTCCTGGGATTGAAGATAGCGGCAAGTCTGAGGCGCATTTGACTTCAGCTGCTGCTTTTGTGGAGGGTGGAATTCAGGATGCTTGTGACGATGCTTGCAGCATCTGTCTTGAAGCCTTCTGTGACAGTGATCCTTCCACCGTGACAAGTTGCAAGCATGAGTTTCATTTTCAGTGCATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGTCCCATGTGTTGGCAACCCATCAGTCTCAAAGATCCATCCAGCCAGGAACTTCTTGAGGCTGTGGAAAGAGAGAGGAACTTTAGGTTAAATCCACCTAGAAAGCCACAATATTTCATCATCCAACTCTGGGGGATTTTGACATATAATCCAACACTTGGCTGCTGCTGCTGCAATGGGCCGAGCACGTCACATTGCAAGAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCTCATTTTTTGGTATGGTCGACCCATCCCAATTCTCCTCCTGTCGCTCCTGCTTCTTCCTCTCCTACTCACAGCCAGAGGGGGGACGGTGAACCAACACCTGCAGTTACTTTTGCCACTCTTTCTCCAGCTCCTGCAACTGGAGAAGAATCACCACAGCTTATTTCAGTTCCTCCTGTTCTAGCTGAACAGGTTTCTGCTTCAGGATCTGGGCCTGCTGTACACACCACTGATCATCAGGGATCATCTAACAATAGGAGATCTCCTAGCCAGTCTTCTCCAAGTAGTCAGGATAGAGCGGGGCCATCGGAATTACAGTCCTTTTCAGAATCCCTGAAATCTAAATTAAATGCTGTGTCGTCAAGATACAAGGAGTCAATTTCCAAGAGCACAAAAGGGTGGAAGGAGAGATGGTTCTCTCGTAATACTTCTATGTCTGATATTGGATCTGAAGTCAGACGAGAAGTTAATGCTGGGATTGCAACCGTGTCACGAATGATGGAACGCCTGGAAACTAGAGACAGTAACAGAAGTAATAGCAATACCAATAGCAATACTGCACCAAGTAATTTGGAGCATGGTTCAGGTCAGGGATCAAGTGATCAGCTTTTAACAGAAACTGAAGGGAGTCAACTGAGAGACACCAACACAAAAACATCTTGTGCTGCAGGTTCTAGTTCTAGTTAA 1143 0.4698 MEGSPGIEDSGKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHFQCILEWCQRSSQCPMCWQPISLKDPSSQELLEAVERERNFRLNPPRKPQYFIIQLWGILTYNPTLGCCCCNGPSTSHCKREGQRNRSSAQGRPHFLVWSTHPNSPPVAPASSSPTHSQRGDGEPTPAVTFATLSPAPATGEESPQLISVPPVLAEQVSASGSGPAVHTTDHQGSSNNRRSPSQSSPSSQDRAGPSELQSFSESLKSKLNAVSSRYKESISKSTKGWKERWFSRNTSMSDIGSEVRREVNAGIATVSRMMERLETRDSNRSNSNTNSNTAPSNLEHGSGQGSSDQLLTETEGSQLRDTNTKTSCAAGSSSS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0761 380 MobiDBLite consensus disorder prediction 221 279 - -
Amo18g0761 380 MobiDBLite consensus disorder prediction 328 380 - -
Amo18g0761 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 85 IPR013083 -
Amo18g0761 380 MobiDBLite consensus disorder prediction 155 380 - -
Amo18g0761 380 SUPERFAMILY RING/U-box 29 83 - -
Amo18g0761 380 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 138 379 - -
Amo18g0761 380 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 107 - -
Amo18g0761 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 138 379 - -
Amo18g0761 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 5 107 - -
Amo18g0761 380 SMART ring_2 36 76 IPR001841 -
Amo18g0761 380 Pfam Ring finger domain 35 76 IPR001841 -
Amo18g0761 380 MobiDBLite consensus disorder prediction 164 182 - -
Amo18g0761 380 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0761 Amo-Chr18 10723084 10726159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0761 33 84 C3H Transcription Factor Family AT4G00335 42.308 1.28e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0761 K19043 - gmx:100814908 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0761 18 10723084 10726159 Amo08g1223 08 20070394 20074299 hybridization