Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0758 ATGGACATGATGGGAACCGAACGTGTTTGTTATGTTTACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGTAGCAGTTTGCTGACCATAGTGACAGTTAGATGTGGGCATTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCTCTTCAAACATTGCCTCCTCAAGACCCTCACCATCATCAGTCACAGAAGCAGCACCTGAGCTTCCAAGATCCAAGCAGCAAGGAACTGGGATCATCCTCATCAAGATGCAACAAGTTATCAGCAGCATTTGATCCTGTAGACCATGATCCCCAACCTAGGATCCCTCCCATTCGTCCTCCGGAAAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATCCAAAGAATTAAGGCTAGCAATCCAGACATAAGCCACAGGGAAGCTTTCAGCACAGCAGCCAAAAATTGGGCTCATTTCCCTCACATTCACTTTGGATTAAAGCTGGATGGAAACAAACAAGCAAAGTTGGACCAAGGGGAAGGGACTCAAAAGTCTAATGGATTCTACTGA 561 0.4563 MDMMGTERVCYVYCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQTLPPQDPHHHQSQKQHLSFQDPSSKELGSSSSRCNKLSAAFDPVDHDPQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGEGTQKSNGFY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0758 186 MobiDBLite consensus disorder prediction 70 91 - -
Amo18g0758 186 SUPERFAMILY HMG-box 108 156 IPR036910 -
Amo18g0758 186 Pfam YABBY protein 6 163 IPR006780 GO:0007275
Amo18g0758 186 PANTHER PROTEIN YABBY 6-RELATED 1 186 IPR006780 GO:0007275
Amo18g0758 186 MobiDBLite consensus disorder prediction 55 118 - -
Amo18g0758 186 PANTHER AXIAL REGULATOR YABBY 2-RELATED 1 186 - -
Amo18g0758 186 Gene3D High mobility group box domain 108 175 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0758 Amo-Chr18 10677840 10685829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0758 4 186 C2C2-YABBY Transcription Factor Family AT1G08465 65.946 1.19e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo18g0758 YABBY 1.9e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0758 K25796 - gmx:100785458 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0758 18 10677840 10685829 Amo08g1227 08 20116629 20119548 hybridization
Amo18g0758 18 10677840 10685829 Amo13g1759 13 25182679 25192924 PCT
Amo13g1759 13 25182679 25192924 Amo18g0758 18 10677840 10685829 PCT