Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0753 ATGTTTGGGAGGGCGCCAAAGAAGAGCGATAACACCAAGTACTATGAGATCCTCGGAGTATCGAAGGAGGCTTCGCAGGACGATTTGAAGAAGGCTTACAAGAAAGCCGCCATCAAGAATCATCCTGACAAAGGAGGTGATCCTGAGAAGTTTAAAGAGCTGGCACATGCTTATGAGGTGCTGAGTGACCCGGAGAAGCGTGAGATTTATGATCAATATGGTGAAGACGCACTTAAGGAAGGAATGGGTGGCGGTGGTGGTGGCCATGATCCATTTGATATCTTCCAGTCTTTCTTCGGGGGAAGTCCATTTGGCTCCGGTGGTGGCGGCAGTAGAGGCCGGAGGCAGAGACGTGGCGAAGATGTGGTTCACCCCCTGAAGGTCTCTTTGGAGGACCTTTACCTTGGGACTTCAAAGAAGCTTTCTCTTTCACGGAATGTCTTGTGTTCTAAATGCAACGGGAAAGGGTCGAAATCTGGAGCTTCAATGACATGTGCTGGCTGTCAAGGTACTGGTATGAAGGTTTCCATTAGGCACCTTGGTCCCTCTATGATTCAGCAAATGCAGCATCCTTGCAATGAATGCAAGGGTACTGGAGAAACAATCAATGAGAAAGACCGGTGCCCACAATGCAAGGGCGAGAAAGTCGTCCAAGAGAAGAAAGTGCTCGAGGTCCATGTGGAGAAGGGAATGCAGAACGGGCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCACCCGATACAGTCACTGGAGATATTGTCTTTGTCCTTCAACAGAAGGAACATCCCAAGTTCAAGAGAAGGGATGAAGACCTCTTTGTTGAGCACTCGCTGTCCCTGACTGAGGCTTTGTGTGGCTTTAAGTTTGTGCTCACTCACTTGGATGGGCGGCAACTTCTCATCAAGTCAAATCCTGGTGAAGTTATTAAGCCTGATTCTTACAAGGCAATAAACGATGAGGGAATGCCAATGTACCAGAGGCCCTTCATGAAGGGGAAGCTTTACATTCACTTCTCGGTAGAATTTCCTGAATCTCTGATCCCTGATCAGGTGAAAGCTTTGGAAGCTGTTCTGCCACCAAAACCTACTTCACAGTTGACTGACATGGAGCTGGACGAGTGCGAGGAGACCACACTGCACGATGTGAACATGGAGGAAGAGATGAGGAGGAGGCAACAGGCTCAGCAGGAGGCATACGACGAGGACGATGATATGCACGGTGGTCATCAGAGAGTACAGTGCGCTCAGCAGTGA 1257 0.4916 MFGRAPKKSDNTKYYEILGVSKEASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFGGSPFGSGGGGSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMTCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINEKDRCPQCKGEKVVQEKKVLEVHVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRRDEDLFVEHSLSLTEALCGFKFVLTHLDGRQLLIKSNPGEVIKPDSYKAINDEGMPMYQRPFMKGKLYIHFSVEFPESLIPDQVKALEAVLPPKPTSQLTDMELDECEETTLHDVNMEEEMRRRQQAQQEAYDEDDDMHGGHQRVQCAQQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0753 418 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Amo18g0753 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 266 355 IPR008971 GO:0006457|GO:0051082
Amo18g0753 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 120 264 IPR008971 GO:0006457|GO:0051082
Amo18g0753 418 SUPERFAMILY Chaperone J-domain 8 111 IPR036869 -
Amo18g0753 418 CDD DnaJ 14 63 IPR001623 -
Amo18g0753 418 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Amo18g0753 418 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Amo18g0753 418 Gene3D - 263 345 - -
Amo18g0753 418 PRINTS DnaJ domain signature 15 33 IPR001623 -
Amo18g0753 418 PRINTS DnaJ domain signature 46 66 IPR001623 -
Amo18g0753 418 PRINTS DnaJ domain signature 66 85 IPR001623 -
Amo18g0753 418 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 418 IPR044713 GO:0006457|GO:0030544
Amo18g0753 418 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Amo18g0753 418 MobiDBLite consensus disorder prediction 380 410 - -
Amo18g0753 418 Gene3D DnaJ domain 10 110 IPR036869 -
Amo18g0753 418 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Amo18g0753 418 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Amo18g0753 418 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 418 - -
Amo18g0753 418 CDD DnaJ_C 120 347 - -
Amo18g0753 418 Pfam DnaJ domain 13 71 IPR001623 -
Amo18g0753 418 MobiDBLite consensus disorder prediction 380 418 - -
Amo18g0753 418 Gene3D - 149 215 - -
Amo18g0753 418 Gene3D - 111 261 - -
Amo18g0753 418 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 218 IPR036410 -
Amo18g0753 418 Hamap Chaperone protein DnaJ [dnaJ]. 10 392 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Amo18g0753 418 SMART dnaj_3 12 66 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0753 Amo-Chr18 10627786 10629755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0753 14 73 C2H2 Transcription Factor Family AT1G74250 46.377 3.37e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0753 K09503 - gmx:547558 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0753 18 10627786 10629755 Amo18g0753 18 10627786 10629755 ECH
Amo18g0753 18 10627786 10629755 Amo13g1722 13 24480132 24483170 PCT
Amo13g1722 13 24480132 24483170 Amo18g0753 18 10627786 10629755 PCT