Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0738 ATGGCAACGTACTTTCATGGAAGCAATTCTGAAATGCAATCTTCTTCGCCTTCAGCTTCCGCTTCTGGTGCAGATGGTGGCTTGCAGACACTTTACCTTATGAACCCAAACTACCACCACGTGCCCTATTCTGACGCGCCGACGCAAAACATGCTTCTTCTTAATCCTAACCACCAAGCYCACGCGCTCAACCTCGCCAACTTATCCCACGCGCCCCCTCCACCACACCACCAACTACTCATTCATCGACTTCCCAACTCCGACGACAACSCCCGGGCCTCTCTCTTCGGACACCACGACATCGCCACGGCTACCGCCCCGCCCACTTTCCACGGCTTCTCTGCGCCGCGCGTGCAGTACAATCTGTGGGGCTCTGTGGTCGACCAGCCTCARCCGTCGCCGTCCAGCAGCTCCGGAGGCGCCGACATGGGTTTCCGGCGGCCTACTCAGCAGGGCTTRTCGCTCAGCCTCTCCTCMCAGCAGCAGCAGCAGCAGCAACAGCAACAAACAGGTACCTATAGGTCTCTCTCCGGCGAGGTTGAAGTTGCCGTTGCCGGAGGTGTCGGTAACTCGCCGTCATCGGCGTCGAACGGGATCTCGGGCGTGCAGGGTGTTCTGTTGGGATCAAAGTACCTGAAAGCCGCACAGGAGCTTCTTGACGAGGTGATGAACGTGGGCAATAAGGGAATTTCAAAGGAGGAGTTCGCAGAGAAGGTGAAGCCCAATAGGGAATCAAATTCTGGCGTCGGTGAAGGATCCAGTGGCGGCGGCGTCTGCGGCGGAGAGAACAGTGACGCCGGGAAGCATGTTGCTGAACTCACGACTGCTCAGAGACAAGAGCTTCAGATGAAGAAATCCAAGCTTGTCTGCATGCTCGATGAGGTGGAACAAAGGTACCGGCAATACCACCACCAAATGCAAGTTGTGATATCATCGTTTGAGCAAGCGGCGGGTTTCGGGGCGGCGAAATCGTACACGTCGCTAGCCCTAAAGACAATCTCGAAGCAATTCCGGTGCCTTAAGGATGCGATATCTTCACAGATAAGAGCAACAAGCAAGACATTGGGAGAGGATGATTGCTTAGGAGCTAAGGTAGAAGGTTCGAGGCTTAGGTATGTGGATCACCATCTTCGCCAACAAAGGGCACTGCAGCAACTTGGAATGATTCAACCCAATGCTTGGAGGCCACAAAGAGGCTTACCTGAACGCGCTGTTTCAATTCTTCGTGCATGGCTTTTTGAGCATTTCCTTCACCCTTATCCTAAGGACTCTGATAAAGTTATGCTAGCAAAGCAAACTGGACTTACTAGGAGCCAGGTGTCTAACTGGTTCATCAATGCCCGGGTTCGGCTATGGAAACCAATGGTTGAGGAAATGTACATGGAAGAAGTGAAGGAGCAAGAAATCAATAACAACAACAACAACGGTTCAGAGAGATCAAAGGAATCAAGCAAGGAGTTAGGTTCAGCTTCAAATGCTACTACTAATAATGGAGCTCCAGATAATAATAACAATAATAATAATCCAGTTCTTGATCCCATAAAAGTTCTTCATCAATCAAAACAAGAATGCTTCAACAACAACAGCTCTCCAACGGGGGCCGGCGAGATCTCGGTGAATTCTTCGTTGTCCACTTCTCCCATGGGTGGAGGAGTAGGATCCCTTCAATCCCACAGCGGTTTCCATCTTGCAGGTTCCTCTGACATGCAAATTAGGAGCCCAAACAAGGCTAGAAACGCTTCCGAAATTATGCATAACTCCCCAAGTAGTATCCTCTCAGTGGACATGGAAATGAAGCACATCAATGGGGATCATCATAGAGAACCCAATAGTATCACTGGTTATGGAGCTTTCTCAATGGAAGACATTGGAACCAGGTTCAGTAATGTCACTGATCATCATCATCATCATCATCATCATCAATTAGGTTCTTCAAGGTTCCAAGGCAACAATGGTGTGTCTCTCACCCTGGGGCTTCCACACAACGACAACACTGTTCCTATCTCCGCAACTCAACATGGATTTCTTCCACAGAATATGCATAGTTTGGGAAGGAGACTTGAGATTGGAAACAATGGCAATGAGTTTTGTGTGATCAACAATCCAAGTTCTTCTCACCCTGGACCTACCTATGAAAGCATTGACATTCAGAACAGAAAGAGGTTTGCTGCACAGTTATTGCATGATTTTGTGGCTTGA 2199 0.4943 MATYFHGSNSEMQSSSPSASASGADGGLQTLYLMNPNYHHVPYSDAPTQNMLLLNPNHQAHALNLANLSHAPPPPHHQLLIHRLPNSDDNXRASLFGHHDIATATAPPTFHGFSAPRVQYNLWGSVVDQPQPSPSSSSGGADMGFRRPTQQGLSLSLSSQQQQQQQQQQTGTYRSLSGEVEVAVAGGVGNSPSSASNGISGVQGVLLGSKYLKAAQELLDEVMNVGNKGISKEEFAEKVKPNRESNSGVGEGSSGGGVCGGENSDAGKHVAELTTAQRQELQMKKSKLVCMLDEVEQRYRQYHHQMQVVISSFEQAAGFGAAKSYTSLALKTISKQFRCLKDAISSQIRATSKTLGEDDCLGAKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEVKEQEINNNNNNGSERSKESSKELGSASNATTNNGAPDNNNNNNNPVLDPIKVLHQSKQECFNNNSSPTGAGEISVNSSLSTSPMGGGVGSLQSHSGFHLAGSSDMQIRSPNKARNASEIMHNSPSSILSVDMEMKHINGDHHREPNSITGYGAFSMEDIGTRFSNVTDHHHHHHHHQLGSSRFQGNNGVSLTLGLPHNDNTVPISATQHGFLPQNMHSLGRRLEIGNNGNEFCVINNPSSSHPGPTYESIDIQNRKRFAAQLLHDFVA* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0738 732 Coils Coil 278 298 - -
Amo18g0738 732 MobiDBLite consensus disorder prediction 644 658 - -
Amo18g0738 732 MobiDBLite consensus disorder prediction 1 25 - -
Amo18g0738 732 Pfam Homeobox KN domain 411 450 IPR008422 GO:0003677|GO:0006355
Amo18g0738 732 Pfam Associated with HOX 205 345 IPR006563 -
Amo18g0738 732 MobiDBLite consensus disorder prediction 236 266 - -
Amo18g0738 732 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 21 681 - -
Amo18g0738 732 ProSiteProfiles 'Homeobox' domain profile. 391 454 IPR001356 GO:0003677
Amo18g0738 732 MobiDBLite consensus disorder prediction 467 585 - -
Amo18g0738 732 SMART prehox3 200 346 IPR006563 -
Amo18g0738 732 CDD homeodomain 394 455 IPR001356 GO:0003677
Amo18g0738 732 MobiDBLite consensus disorder prediction 520 585 - -
Amo18g0738 732 MobiDBLite consensus disorder prediction 486 513 - -
Amo18g0738 732 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 21 681 - -
Amo18g0738 732 SUPERFAMILY Homeodomain-like 395 461 IPR009057 -
Amo18g0738 732 MobiDBLite consensus disorder prediction 1 26 - -
Amo18g0738 732 MobiDBLite consensus disorder prediction 631 658 - -
Amo18g0738 732 Gene3D - 397 476 - -
Amo18g0738 732 MobiDBLite consensus disorder prediction 124 174 - -
Amo18g0738 732 SMART HOX_1 394 458 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0738 Amo-Chr18 10407590 10412242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0738 1 732 Homeobox Transcription Factor Family AT2G35940 42.857 6.16e-135 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo18g0738 POX 4.2e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0738 - - gmx:100779075 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0738 18 10407590 10412242 Amo18g0738 18 10407590 10412242 ECH