Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0724 ATGAAGCGCCAGGTGCCCCTCCCTTCCACCAAACCGCCTTTTGCTCCSCCCGCAGACTACCATCGCTTCGCCACCGACCACCGCACAACTTCTCAGAACGACGCCGACGCCATTGCCGTTAAAACTCCTCAATTAAAGCGGAAGAGTGTTACAACTGATCTTGAAGGTGATTCTGGTAATGTGACTCCAGCATCCACTGAAGCAGTTAATAGTCCTTTCCGGACACCTATCTCGAGGAAGACGGGAAAGGCAAGCAAATCCTCTCGACTTACAAAATGCAACAGATCAGGATCTCAAATCCCTGGATCAAATATCAGTTCACCATCAGCAAATAATCTCGCACCTTCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGAGACATTAGAGGTACAAAAGAGGAGGATATATGATATAACGAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTAAAGAACAGAATTCAATGGAAGGGACTGGATGTTTCAAGACCAGGGCAGGCTGTTGATAGTTTTGCTAGTTTACAGGCTGAAGTAGAAAATCTTACAAATGAGGAGCACCGGTTAGACGAGCAAATAAGAGAGATGCAAGAAAGATTAAGAGGTSTTAGTGAAGAYGAAAACACTCAAAGGTATCTTTTTGTCACCGAGGAAGATATAAAGAGTTTGCCCTCRTCTCAGAATGAAACCTTGATAGCAATTAAAGCTCCATATTGCACCACTTTGGAGGTCCCTGATCCTGATGAGGTTGTTGATTATCCTCAGAGGAAATACAGGATTGTCCTGAGAAGCACAACGGGCCCAATAGACGTTTATCTTCTTAGTCAATTTGAAGAGAAATTTGAGATTAATGGTGTTAATGTGGGCCCAAATATTCCATCAAGACCAGATTTCAATAAGCACCAATCAACAGTGGTCTCAAATGATAGAGGCAAGGACCTTGAAATGGGGATACAAGATGTATATAGGCCTTCAGATTTATCTAATTCACATGATTTTGCGGGTGGGATCACGAAGATTGTTCCTTCAGATTTTGAGAGTGACGCTGATTACTGGCTTTTATCGGATGCCGATGTTAGCATAACAGACATGTGGAGGACAGAACCCGGCGAAGTTGAATGGCATAATCTGGAAACTCCAAAAGAAGATTATTGTATGACTCATGTGAGCCCACCACCTCCCCAAACCCCTCCCTCAAACATAAGTGAAGCACCTTCGGCATCTAACCCTCCTGTAGCTTGA 1320 0.4311 MKRQVPLPSTKPPFAPPADYHRFATDHRTTSQNDADAIAVKTPQLKRKSVTTDLEGDSGNVTPASTEAVNSPFRTPISRKTGKASKSSRLTKCNRSGSQIPGSNISSPSANNLAPSGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGQAVDSFASLQAEVENLTNEEHRLDEQIREMQERLRGXSEDENTQRYLFVTEEDIKSLPSSQNETLIAIKAPYCTTLEVPDPDEVVDYPQRKYRIVLRSTTGPIDVYLLSQFEEKFEINGVNVGPNIPSRPDFNKHQSTVVSNDRGKDLEMGIQDVYRPSDLSNSHDFAGGITKIVPSDFESDADYWLLSDADVSITDMWRTEPGEVEWHNLETPKEDYCMTHVSPPPPQTPPSNISEAPSASNPPVA* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0724 439 Coils Coil 198 228 - -
Amo18g0724 439 Pfam E2F/DP family winged-helix DNA-binding domain 122 185 IPR003316 GO:0005667|GO:0006355
Amo18g0724 439 CDD E2F_DD 196 302 IPR032198 GO:0046983
Amo18g0724 439 Gene3D - 194 302 - -
Amo18g0724 439 MobiDBLite consensus disorder prediction 409 439 - -
Amo18g0724 439 SUPERFAMILY E2F-DP heterodimerization region 199 301 IPR037241 -
Amo18g0724 439 Pfam E2F transcription factor CC-MB domain 201 300 IPR032198 GO:0046983
Amo18g0724 439 Gene3D - 114 187 IPR036388 -
Amo18g0724 439 SMART E2F_TDP_2 120 185 IPR003316 GO:0005667|GO:0006355
Amo18g0724 439 MobiDBLite consensus disorder prediction 1 115 - -
Amo18g0724 439 PANTHER TRANSCRIPTION FACTOR E2FB 2 435 - -
Amo18g0724 439 Coils Coil 230 232 - -
Amo18g0724 439 Coils Coil 136 156 - -
Amo18g0724 439 SUPERFAMILY "Winged helix" DNA-binding domain 120 183 IPR036390 -
Amo18g0724 439 MobiDBLite consensus disorder prediction 54 115 - -
Amo18g0724 439 PANTHER TRANSCRIPTION FACTOR E2F 2 435 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0724 Amo-Chr18 9950939 9955413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0724 2 439 E2F-DP Transcription Factor Family AT5G22220 53.079 7.14e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Amo18g0724 E2F_CC-MB 2.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0724 K06620 - gmx:100819817 612.838