Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0714 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTAAAAGTTAGGGTTCTAAGGCTTTGGGTTGTCCCCTCTTTTGGGAATCATGATGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATAAATTCAAATTGGTTTTCCTTCACCGAATCATTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGTTGAACATGACCAAAGATTATGATTTTTTAGTTGATGTCATTGGACTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGAGAAAATTGTGAAAATGATTGTGCTTGAATTAACTTCAAAAGATCTTACAGTGAGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGTGGAGCAGCCTGTTGTAGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACACAAATATTATTTAATCCTGATCTTTCTGAAGTTGTGGAATTCAGGCAGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAAATGGTACATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAGTAACAGTTGAAGATCATAGTGGGGAGGATATTTTCCTTCTCTTTGATTGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACCGAGCTTGTATGTGGGGATACTTATCCTCCTATATTCCAAGAGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTGCCACATGATACATTTTATGGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAGCTTCCCGATTATAATGGTGATGATGAGTCTACTCCAAAAAATATTAGATATACATATAATTATTTTTACATTGAGCCTGATTTACACAAATCTGTTCCCTGTGGAGAAGGAGATATTGGTATTAAGAAGGAGTCATCAAAGACTTTTATCAAAAGTGAGAAAGTTGCTAGTGAGTCTTCTGGGATTTTATCTAAAACCCCATTTTTTATAGATTTTTTGGCTGGAAAACAGCCTGCTATTTCCGAAGGGACTGAGTTTGCTTCCTTAATTAATGGTGAACATGGAAATGATGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACGTTATTGATGCACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATCATGTTGTCTCCTCCAAGGGCAAGAGAAATCTGAATCCCCAATTTCAAGAGGCTGCTGCTGATGCAGATGGGCGTGGGTTCAAGATTGCCAAGGTTAATAGAGTTTGA 1698 0.3763 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHDVPNSMEMILLDEHCGKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHKFKLVFLHRIIVVAVDEDVIPKTCFNMFPFSELLNMTKDYDFLVDVIGLLTSVGEEKEYAKEEKIVKMIVLELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQILFNPDLSEVVEFRQRRVLLSFLVQSKVLLRMEVGGILLVCVERVSILKNGTYYCDFCLKHITNVTPRFKIKVTVEDHSGEDIFLLFDCEASYLLKKSCADLFTELVCGDTYPPIFQELIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIIAMFELPDYNGDDESTPKNIRYTYNYFYIEPDLHKSVPCGEGDIGIKKESSKTFIKSEKVASESSGILSKTPFFIDFLAGKQPAISEGTEFASLINGEHGNDEKTPSNDTVSDDLSAELDILLSSPEKETQEVLSHVIDAPSQYGEKLIHENHVVSSKGKRNLNPQFQEAAADADGRGFKIAKVNRV* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0714 565 SUPERFAMILY Nucleic acid-binding proteins 3 111 IPR012340 -
Amo18g0714 565 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 328 - -
Amo18g0714 565 CDD RPA1_DBD_A_like 19 107 - -
Amo18g0714 565 SUPERFAMILY Nucleic acid-binding proteins 120 241 IPR012340 -
Amo18g0714 565 Pfam Domain of unknown function DUF223 43 133 IPR003871 -
Amo18g0714 565 PANTHER REPLICATION FACTOR A 1, RFA1 22 328 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo18g0714 565 CDD RPA1_DBD_B_like 140 242 - -
Amo18g0714 565 Gene3D - 4 112 IPR012340 -
Amo18g0714 565 Gene3D - 264 376 IPR012340 -
Amo18g0714 565 Gene3D - 114 243 IPR012340 -
Amo18g0714 565 SUPERFAMILY Nucleic acid-binding proteins 266 373 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0714 Amo-Chr18 9815564 9818434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0714 11 327 Core DNA Replication Machinery Family AT5G08020 21.716 5.11e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0714 - - adu:107471135 778.474