Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0709 ATGAGGAAAGAGGCTCGGCCGGATCTTATAACCTTTGTTGGTGTTCTAGCAGCTTGCAGCCGTGGGCTTCTGCTCAATGAAGGGCAAGCATTTTATGATATGATGATGAGGGATTATGGTATCAATCCAACTATTCAACACTACACATGCATGGAAGTTATGGGTCAAGAATTTTCTCATGAAGGGGTTAATAGCGAGCATACATCATATGATCAGTATGAGCAGGAGGAAGAAAAATATGAGGAAGTTGACGTGGATTATATGGATGAGGACGACACAAGTGTGGAACCAATGTTCGATTATCACGGCTTCGATGAAGGGTATAACATTGACTCACTTGAAGACATTGGGATGATTGAATTTTGGAACATCAGGGATGAAGATGTATGTCATTTTCACTTTTCTGATATCGACATTGCATTTGAGTTCTACAATAGATATGCAAGGACAAGAGGCTTTAGTGCTTGGAAGAACAGGAGTAGGAAGAGTCGTGCGGGCGCACTTAAGTTGAAGAATTTTGTATGTCATCGTGAAGGATTTAGACTGCAAAATAATTACGGCATTGGAAACCTTAAGAGAAAACCTACACCCGAGACAAGGTGTGGTTGCAGTGCAATGATGGAGATTCGTGTAGATGCACCTAGTGGTCGTTGGTACAATCTGGTTGAGTTCATTCAACACTTTAATCGTTGTGTCGACCATATAAGGTGGAAAGAGGTCCAGGCTGACCTCGCCTCTGTGAATGGGAGACCCAGTATGCAAACCTGTTTTCAACAGTTAGAGAGGAGTGCTGCCAATGTTTACACCCTATCAATATTTCATATGTTCCAACCAATCCTTGTACGGGCTGCATCAATGAAGGTAATAAATATGAGGCAAACTGGCTCTTATGTGATTTACTCTGTCGCTTTAGACCGAATGCCAAATGAGATGTGGCGTGTATTCTGTTGTGACATTGAGATGGAATTCAATTGTTCATGTATGAGAATGGAATCATTTGGCATACCTTGTGAACACATAATTTGCGTCTTGGTGCATGAAGATATAGAGGAGTTGCCAAGGTCATTAGTCTTGCCTCGGTGGACCAAGACTGCCAAAGTTAGTTTCCAAAATGCTCGAGGGCTTCATTGGGATTCTTTGATGCTAAGTCAATACGGTTGTTTGATGGATTGGTTTAGACAACTAGCCAACTTTGCTTGTCGAGATAACGAGAGATTTATCTTTACACGGGAAATGGCTATGAATTTGTTGAAACAATTTAAGGAGGAAGATGCTGCACAAAAAGAGTTGGTCAATGATGCAGATAGTGTAAGAAATGGTGTGCAAGTGGATAATTCTGGAGCTGGGCTTGCAACCAATGATCTCGGACATAGCATGCCAAGGGACCCAAGAAAATGTAGGACAAAAGGGGGCTTCACAGTCCAATAA 1428 0.4195 MRKEARPDLITFVGVLAACSRGLLLNEGQAFYDMMMRDYGINPTIQHYTCMEVMGQEFSHEGVNSEHTSYDQYEQEEEKYEEVDVDYMDEDDTSVEPMFDYHGFDEGYNIDSLEDIGMIEFWNIRDEDVCHFHFSDIDIAFEFYNRYARTRGFSAWKNRSRKSRAGALKLKNFVCHREGFRLQNNYGIGNLKRKPTPETRCGCSAMMEIRVDAPSGRWYNLVEFIQHFNRCVDHIRWKEVQADLASVNGRPSMQTCFQQLERSAANVYTLSIFHMFQPILVRAASMKVINMRQTGSYVIYSVALDRMPNEMWRVFCCDIEMEFNCSCMRMESFGIPCEHIICVLVHEDIEELPRSLVLPRWTKTAKVSFQNARGLHWDSLMLSQYGCLMDWFRQLANFACRDNERFIFTREMAMNLLKQFKEEDAAQKELVNDADSVRNGVQVDNSGAGLATNDLGHSMPRDPRKCRTKGGFTVQ* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0709 475 ProSiteProfiles Zinc finger SWIM-type profile. 300 348 IPR007527 GO:0008270
Amo18g0709 475 MobiDBLite consensus disorder prediction 441 475 - -
Amo18g0709 475 PANTHER OS03G0181600 PROTEIN 220 429 - -
Amo18g0709 475 SMART 26again6 323 350 IPR006564 GO:0008270
Amo18g0709 475 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Amo18g0709 475 PANTHER OS03G0181600 PROTEIN 133 217 - -
Amo18g0709 475 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 133 217 IPR031052 GO:0006355
Amo18g0709 475 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 220 429 IPR031052 GO:0006355
Amo18g0709 475 Pfam FAR1 DNA-binding domain 142 229 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0709 Amo-Chr18 9767154 9769823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0709 5 51 Glycoside Hydrolase AT3G49170 38.298 6.23e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g0709 FAR1 2.3e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0709 - - aip:110272016 517.309