Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0704 ATGGATAATGAAATTGAGGTTCCTGCACATTTTCTCTGCCCAATATCCCTTCAACTCATGAGAGACCCTGTAATCGTTTGCAGCGGTATCACTTACGACAGAGAGAACATAGAGAAATGGTTATTCTCATGCAAAAACAAAGCATGCCCGGTTACCAAACAGTCCCTAATACAACACACAGATCTTGATCTTGTTCTTACTCCAAACCACACCCTACGAAGGCTCATCCAATCATGGTGCACCGTAAACGCCTCTCTCGGAATCGAGCGTATCCCTACTCCAAAACCGTCCATGGACGCATCGTCTCACATCGCCAAACTCATCTCCGAAGCGAAGCGATTCCCGGAGGCTAAGGAGAACTGCCTCGCAACACTCAGATCCATGGCGTTCTTTGAAAGGAACAAGAGCTGTTTCCAGTCTTCAGGTGCAATAGAGTTCTTAGCTACAATCATGATGAAGAACAACAATCGCGCCGAAGAAGAAGAACGAGATCTAACTGAAGCTGCGATTGAGATCTTGTTTCATCTTGATCTCTCGGAAAATCAGATCAAGAAGCTAATCAACAACGAGTGCCTTCAGTTTCTTGAATCGTTGCTGCAAGCGTTGAAGCGTGGGAGCTGCCAATCAAGAGCGTACGCAACACTTCTTTTGAAATCGGCATTTGCGGTTTCAAATCCGATCCAGTTAATCAGCGCGAAAACCGAAATGCTGTTTGAAATCACGAGAGTGATACGCGATCGTATATCGCAGCAGGCTCATAAGGCGGCATTGAAGCTGGTGGTTGAGCTCTGTCCATGGGGAAGAAACAGAATCAAAGCGGTGGAAGCCGGCGCGGTGTCCGTGCTCGTGGAAGTGCTTCTTGATTCGACGGAAAGAAGAACGTGTGAGCTGGCGTTAATGGCGTTGGATCAGCTTTGCGGTTGCGCGGAAGGGCGCGCGGAGTTGGTGAAGCACGGCGCGGGAATCGCCGTGGTTTCGAAGAAAATATTGAGAGTTTCACGCGCCGCGAGTGACAGAGGAGTTAGGATATTAGCGTCGGTTTGTAGGTTCTGTGGAAGCGGGAGAGTAGTTCAAGAGATGATGCAGGTAGGAGCCGTTAACAAGCTGTGTTTGGTGCTTCAAGTTGATAGCGCTTTGAAGACCAAAGAGAGAGCTAAAGAGATTCTCAAGTTGCATTCTCTGATTTGGAAGAATTCAACATGTATTCCTCTACCTTTGTTATCATCGTATCCATGA 1236 0.4757 MDNEIEVPAHFLCPISLQLMRDPVIVCSGITYDRENIEKWLFSCKNKACPVTKQSLIQHTDLDLVLTPNHTLRRLIQSWCTVNASLGIERIPTPKPSMDASSHIAKLISEAKRFPEAKENCLATLRSMAFFERNKSCFQSSGAIEFLATIMMKNNNRAEEEERDLTEAAIEILFHLDLSENQIKKLINNECLQFLESLLQALKRGSCQSRAYATLLLKSAFAVSNPIQLISAKTEMLFEITRVIRDRISQQAHKAALKLVVELCPWGRNRIKAVEAGAVSVLVEVLLDSTERRTCELALMALDQLCGCAEGRAELVKHGAGIAVVSKKILRVSRAASDRGVRILASVCRFCGSGRVVQEMMQVGAVNKLCLVLQVDSALKTKERAKEILKLHSLIWKNSTCIPLPLLSSYP* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0704 411 PANTHER OS11G0573500 PROTEIN 6 411 - -
Amo18g0704 411 SUPERFAMILY RING/U-box 5 84 - -
Amo18g0704 411 ProSiteProfiles Leucine-rich repeat profile. 172 193 IPR001611 GO:0005515
Amo18g0704 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Amo18g0704 411 CDD RING-Ubox_PUB 11 54 IPR045210 -
Amo18g0704 411 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Amo18g0704 411 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Amo18g0704 411 Gene3D - 231 390 IPR011989 -
Amo18g0704 411 Coils Coil 151 171 - -
Amo18g0704 411 PANTHER WDSAM1 PROTEIN 6 411 IPR045185 GO:0061630
Amo18g0704 411 SUPERFAMILY ARM repeat 195 377 IPR016024 -
Amo18g0704 411 SUPERFAMILY ARM repeat 114 221 IPR016024 -
Amo18g0704 411 Pfam U-box domain 7 82 IPR003613 GO:0004842|GO:0016567
Amo18g0704 411 Gene3D - 97 226 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0704 Amo-Chr18 9684873 9686229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0704 1 411 U-box Gene Family AT2G35930 52.404 1.47e-147 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0704 - - gmx:100778012 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0704 18 9684873 9686229 Amo13g1737 13 24757439 24759751 PCT
Amo13g1737 13 24757439 24759751 Amo18g0704 18 9684873 9686229 PCT