Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0703 ATGGCGGAAATCAAAGTTCCTGAGTTGTTGCTGTGTCCCATCTCGCTTGAGATAATGAAGGATCCGGTGACAACCGTAACAGGGATAACATACGACAGAGAAAGCATAGAAGAATGGCTGCAGCAGAAATCTAATAAGAAGGATTGTATGTGTCCCGTTACAAAGCAACCATTGCCGACGGACCCTCATTTCTTGACTCCAAACCACACCCTCCGGAGGTTTATCCAAGGCTGGTGTTCAGCCAACCAATCCAACGGCGTCGATCGGATTACCACCCCCAGGTCCCCTCTCGACAACTCCCAACTTCACAAACTCCTCACAGATCTTGATGCTCCTCGCACCTTTCAAACCTCATTGAACAAGATGCATGATCTAGCCACTCAGAGCCAGAGGAACCGCAACTTCATGGCTCAACAACCAGTACCCAAGGCCATGGTACAATTCATCACAACCACTTTCAAACAAGGCGAAACCAGCGGCGTTGAAGAAGCTCTGAGAATTCTTCGCTTACTATGGAGGAGCACTTCATCATCATCATCGTCGTCATCCTCGCCAACTGGCGGCGGCGGCGGCACAAACATGAAGCCCCTGGTAGGTGAAACCTTGGACTTCATCAAATCGTTGACTTGGATTCTTCAACTCCCAATAATCGACAATGACCTTAACATGGTTAACGAAGCAATGCAAATTCTAAAGCTGACCATCGAAATCACCGATTCAACGCTCTTGGGAAGCTTAAACCACGAGTTCTTCAAACAAATCGTGAGCACCATGAGGAGACTAAGCAAATCATCATCATCAATTCCCCAAAATGCCCTCAAATCCGCGTTACACGTGCTCATAGAAACATGCCCCTTAGGAAGAAACAGAACGAAGATCGTGGAATCCGGTGCAGTTGGCGAACTCATCGAACTGTCCATGGATAAACCAACGGAGAAGAACCTAACGGAGCTTATATTCAAGCTGTTGGGTCAACTGTGCTCGTGTGCAGAAGGGAGAGAAGAGTTCTTGAAGCACCCGGCGGGAATCGCTGTTGTTTCGAAGAGGACGCTGAGGGTATCCGCAGCGACTGATGATGGAGCCCTTCATGTGTTATGGCTGATTTCAAAGTTTTCAGCTACGAGTGAGGTGGTTCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTATGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAACAAAAGGCAACAGATATTCTTAGGTTTCATTCAAAGGCTTGGAATAATTCTCCTTGTATTCAACTCTATTTGTTAACTAGACACCCAAGATGA 1302 0.47 MAEIKVPELLLCPISLEIMKDPVTTVTGITYDRESIEEWLQQKSNKKDCMCPVTKQPLPTDPHFLTPNHTLRRFIQGWCSANQSNGVDRITTPRSPLDNSQLHKLLTDLDAPRTFQTSLNKMHDLATQSQRNRNFMAQQPVPKAMVQFITTTFKQGETSGVEEALRILRLLWRSTSSSSSSSSSPTGGGGGTNMKPLVGETLDFIKSLTWILQLPIIDNDLNMVNEAMQILKLTIEITDSTLLGSLNHEFFKQIVSTMRRLSKSSSSIPQNALKSALHVLIETCPLGRNRTKIVESGAVGELIELSMDKPTEKNLTELIFKLLGQLCSCAEGREEFLKHPAGIAVVSKRTLRVSAATDDGALHVLWLISKFSATSEVVQEMLRVGAVSKLCMVMQADCASYLKQKATDILRFHSKAWNNSPCIQLYLLTRHPR* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0703 433 Gene3D - 100 420 IPR011989 -
Amo18g0703 433 Pfam U-box domain 6 83 IPR003613 GO:0004842|GO:0016567
Amo18g0703 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
Amo18g0703 433 SUPERFAMILY ARM repeat 222 410 IPR016024 -
Amo18g0703 433 SMART Ubox_2 9 78 IPR003613 GO:0004842|GO:0016567
Amo18g0703 433 PANTHER WDSAM1 PROTEIN 1 432 IPR045185 GO:0061630
Amo18g0703 433 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 432 - -
Amo18g0703 433 SUPERFAMILY RING/U-box 4 86 - -
Amo18g0703 433 ProSiteProfiles U-box domain profile. 5 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0703 Amo-Chr18 9679449 9681518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0703 3 430 U-box Gene Family AT3G11840 38.593 1.10e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0703 - - adu:107461999 822.772