Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0702 ATGGCAACGTACTTTCATGGAAGCAATTCTGAAATGCAATCTTCTTCGCCTTCAGCTTCCGCTTCTGGTGCAGATGGTGGCTTGCAGACACTTTACCTTATGAACCCAAACTACCACCACGTGCCCTATTCTGACGCGCCGACGCAAAACATGCTTCTTCTTAATCCTAACCACCAAGCTCACGCGCTCAACCTCGCCAACTTATCCCACGCGCCCCCTCCACCACACCACCAACTACTCATTCATCGACTTCCCAACTCCGACGACAACACCCGGGCCTCTCTCTTCGGACACCACGACATCGCCACGGCTACCGCCCCGCCCACTTTCCACGGCTTCTCTGCGCCGCGCGTGCAGTACAATCTGTGGGGCTCTGTGGTCGACCAGCCTCAACCGTCGCCGTCCAGCAGCTCCGGAGGCGCCGACATGGGTTTCCGGCGGCCTACTCAGCAGGGCTTATCGCTCAGCCTCTCCTCCCAGCAGCAGCAGCAGCAGCAACAGCAACAAACAGGTACCTATAGGTCTCTCTCCGGCGAGGTTGAAGTTGCCGTTGCCGGAGGTGTCGGTAACTCGCCGTCATCGGCGTCGAACGGGATCTCGGGCGTGCAGGGTGTTCTGTTGGGATCAAAGTACCTGAAAGCCGCACAGGAGCTTCTTGACGAGGTGGTGAACGTGGGCAATAAGGGAATTTCAAAGGAGGAGTTGGCAGAGAAGGTGAAGCCCAATAGGGAATCAAATTCTGGCGTGGGCGAAGGATCCAGTGGCGGCGGCGGAGAGAACAGTGACGCCGGGAAGCATGTTGCTGAACTGACCACTGCTCAGAGACAAGAGCTTCAGATGAAGAAATCCAAGCTTGTCTCCATGCTCGATGAGGTGGAACAAAGGTACCGGCAATACCACCACCAAATGCAAGTTGTGATATCATCGTTTGAGCAAGCGGCGGGTTTCGGGGCGGCCAAATCGTACACGTCGCTAGCCCTAAAGACAATCTCGAAGCAATTCCGGTGCCTTAAGGATGCCATATCTTCACAGATAAGAGCAACGAGCAAGACATTGGGAGAGGATGATTGCTTAGGAGCTAAGGTAGAAGGTTCCAGGCTTAGGTATGTGGATCACCATCTTCGTCAACAAAGGGCACTGCAGCAACTTGGAATGATTCAACCCAATGCTTGGAGGCCACAAAGAGGCTTACCTGAACGCGCTGTTTCAATTCTTCGTGCATGGCTTTTTGAGCATTTCCTTCACCCTTATCCTAAGGACTCTGATAAAGTTATGCTAGCAAAGCAAACTGGACTTACTAGGAGCCAGGTCTCTAACTGGTTCATCAATGCCCGGGTTCGGCTATGGAAACCAATGGTTGAGGAAATGTACATGGAAGAAGTGAAGGAGCAAGAAAACAACAACAACAACAACGGTTCAGAGAGATCAAAGGAATCAAGCAAGGAGTTAGGTTCAGCTTCAAATGCTACTACTAATAATGGAGCTCCAGATAATAATAACAATAATAATCCAGTTCTTGATCCCATAAAAGTTCTTCATCAATCAAAACAAGAATGCTTCAACAACAACAGCTCTCCAACCGGCGCCGGCGAGATCTCGGTGAATTCTTCCTTGTCCACTTCTCCCATGGGTGGAGGAGTAGGATCCCTTCAATCCCACAGCGGTTTCCATCTTGCAGGTTCCTCTGACATGCAAATTAGGAGCCCAAACAAGGCTAGAAACGCTTCCGAAATTATGCATAACTCCCCAAGTAGTATCCTCTCAGTGGACATGGAAATGAAGCACATCAATGGGGATCATCATAGAGAACCCAATAGTATCACTGGTTATGGAGCTTTCTCAATGGAAGACATTGGAACCAGGTTCAGTACTGTCACTGATCATCATCATCATCAATTAGCTTCTTCAAGGTTCCAAGGAAACAATGGTGTGTCTCTCACCCTGGGGCTTCCACACGACGACAACAGTGTTCCTATCTCCGCAACTCAACATGGATTTCTTCCACAGAATATGCATAGTTTGGGAAGGAGACTTGAGATTGGAAACAATGGGAACGAGTTTTGTGTGATCAACAATCCAAGTTCTTCTCACCCTGGACCTACCTATGAAAGCATTGACATTCAGAACAGAAAGAGGTTTGCTGCACAGTTATTGCATGATTTTGTGGCTTGA 2172 0.4977 MATYFHGSNSEMQSSSPSASASGADGGLQTLYLMNPNYHHVPYSDAPTQNMLLLNPNHQAHALNLANLSHAPPPPHHQLLIHRLPNSDDNTRASLFGHHDIATATAPPTFHGFSAPRVQYNLWGSVVDQPQPSPSSSSGGADMGFRRPTQQGLSLSLSSQQQQQQQQQQTGTYRSLSGEVEVAVAGGVGNSPSSASNGISGVQGVLLGSKYLKAAQELLDEVVNVGNKGISKEELAEKVKPNRESNSGVGEGSSGGGGENSDAGKHVAELTTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQVVISSFEQAAGFGAAKSYTSLALKTISKQFRCLKDAISSQIRATSKTLGEDDCLGAKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEVKEQENNNNNNGSERSKESSKELGSASNATTNNGAPDNNNNNNPVLDPIKVLHQSKQECFNNNSSPTGAGEISVNSSLSTSPMGGGVGSLQSHSGFHLAGSSDMQIRSPNKARNASEIMHNSPSSILSVDMEMKHINGDHHREPNSITGYGAFSMEDIGTRFSTVTDHHHHQLASSRFQGNNGVSLTLGLPHDDNSVPISATQHGFLPQNMHSLGRRLEIGNNGNEFCVINNPSSSHPGPTYESIDIQNRKRFAAQLLHDFVA* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0702 723 Pfam Homeobox KN domain 408 447 IPR008422 GO:0003677|GO:0006355
Amo18g0702 723 SUPERFAMILY Homeodomain-like 392 458 IPR009057 -
Amo18g0702 723 Gene3D - 394 473 - -
Amo18g0702 723 ProSiteProfiles 'Homeobox' domain profile. 388 451 IPR001356 GO:0003677
Amo18g0702 723 Pfam Associated with HOX 205 342 IPR006563 -
Amo18g0702 723 SMART prehox3 200 343 IPR006563 -
Amo18g0702 723 Coils Coil 275 295 - -
Amo18g0702 723 MobiDBLite consensus disorder prediction 125 174 - -
Amo18g0702 723 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 21 672 - -
Amo18g0702 723 MobiDBLite consensus disorder prediction 1 23 - -
Amo18g0702 723 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 21 672 - -
Amo18g0702 723 CDD homeodomain 391 452 IPR001356 GO:0003677
Amo18g0702 723 SMART HOX_1 391 455 IPR001356 GO:0003677
Amo18g0702 723 MobiDBLite consensus disorder prediction 519 547 - -
Amo18g0702 723 MobiDBLite consensus disorder prediction 482 507 - -
Amo18g0702 723 MobiDBLite consensus disorder prediction 236 264 - -
Amo18g0702 723 MobiDBLite consensus disorder prediction 462 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0702 Amo-Chr18 9655126 9659123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0702 1 723 Homeobox Transcription Factor Family AT2G35940 44.805 7.53e-138 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo18g0702 POX 6.1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0702 - - gmx:100779075 744.191