Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0701 ATGGGGTTTTTGCTGAAAGAAGCTTTAAAGACTCTCTGCGGTCGGAATCAGTGGTCTTATGCTGTGTTCTGGAAGATCGGATGCAACAATTCAAAACTATTGATCTGGGAAGAATGTTATTATGAACCATTGCCATGTTCTTTCCCTCAACCAACTTTTGGGAATGGAGAAGGCAGCTGGTTTTCTTCCGAGTCTCGCTCGTCTCAGATGGGGATCCAAGAGGAGGACAGAGTTTGTTCTTTGATTAACAAAATGACAGTGAATAATTCAGTCAATATCGCAGGTGAAGGAATAATTGGACGCGCTGCATTTACTGGCAACCATCAGTGGATTCTTTTCAACAATTTTAGTAGAGATGCATATCCACCTGAGGTATATGCTGAGATGCATCACCAACTTTCAGCTGGAATGCAGACTGTTGCAGTGATTCCTGTGCTTCCCCATGGGGTTGTTCAACTTGGATCTTTCTTGCCACAATGTCAACCGCTACAGATAATGGAGAATATTGGGTTTGTAAATGATGTAAAGAGCTTGATCTTGCAACTTGGATGCATTCCCGGTGCCCTTCTATCGGAAGATTATTCAGGAAGTCCTTCCATTGGAAGAGCACTTGCTACTGGCGGCTTGCCTGTCTCTGTCGAACCACCTGGAATTCCCTCACATTGCATTCCATCAGTATCTAATGGCTCAAATGAGCAAAGTAACCCATCTCATGTTTCAAGGCCAACTGTTCAAACACTCTGTCCTATAAGGGGAGAAATGAATAACTTCCAAGGTTCAGTATTGACTCCCAAAACTCATAACCTGAGCCAGATATCAAATGGTTATTGCCAACCAAATGCTACTACATTGATTAAAACAAACTTTGCTGGCCGAAGTGAGAATAGGGTTGTGGAGGCTGAAGTGATACCCTCAAGCAGAGGTTCATGCCTACAGCAGCCTTCTGTTTCATATAATGCAAGATCTGCATTCAATGGCTTATCCAGTTTCGGTCAATCAGTTGCAAGCGATTGCAATCTAAAATATATGGAGCAACAAATGATGTCAGTCCTTGGGAATCAAGGTCACAGTAATCCTAGTATAAATGCGTCAAGTACATTAAACATGTCTCTACTAAAGACAGATGGAGGCCATATACTTGATCACAATCAAAGTTCTAGCAGTGCTTCATTACTTGCTGGAATACCAATACATGGTGGGGTGAGTAGTCTTTTGAGGACAAGTCTTGTTACTGATTCTGGTTTAAGAACTCCAGATGTGTCTGTTGGTGATTTATCCGGAGCACAAGGGGGTGGGGTTGGAGTTAAAAGTGATGGTTCAAGTGAAGCAGGTGGTTCTTCTCTGGCTAATTTGTTCAGTCACTCAGGTTCCTTTACTGTGCCTCCACAAGGTTCTGATCAGAAGCTTCTCTCTGTAGATGTGAAGCATGTTCATGATGCTTTACCTTCAAAGCCTGTGACTACCGGAGATCAAAGCCCTGATTTTGTCCAAGATTGTGTTAATAAACATGTTACTGGTCAATCTATGGTGAAGAATGTTAAACAAGAACAAGTTTGTGCTCAACCGTCATCAGGTGATGATCTGTTTGATATTCTAGGAGCAGATTTCAAAAACCAACTTCTGAGTGGAAACTGGGATAAGTTGTTTGCTGTTGGATCTGAATCTAATACAGAAAATATGGATAAAAAGCCAACATGTATGAATATGCAGGGTATGAACTCTGATTATTACTCTGCAAGTGAAGCAATATCAGAGAGTGACATATTTTCTGGGACAGGCACAGACCACCTCCTGGATGCTGTGGTTTCAAAGACCAAATCTGTCATGAAACAGAATTCTGATGACATGTCTTGCAGGACAACTTTGACAAGTAGTACCTGTTCAGTTCCCTCTCGTGCCTACAAGCCGGCTATGCCTGATCATATCCAGGGTGGGATGTTTGGTATTCCTAAGAGTGAGGGTAAAACAGGTGCTGTTGAAAATTCCATGAGGTCTGGATGTATTAAGGACGACGATGGAAAGTGTTCCCAAACTTCTTCTATGTTTGGGTCCCAACTTAGTTCATGGGTTGAAAATAGTAGCAAGCTTAAGCTTGAAAATAGTGTTTCGACTGGATACTCCAAGCGGCCTGATGAAGTTTGCAAATCGAATCGCAAAAGGCTTAAACCGGGAGAGAATCCTAGGCCTCGACCTAAGGATCGCCAAATGATTCAAGATCGTGTAAAAGAGTTACGGGAAATTGTGCCAAATGGAGCAAAGTGTAGCATAGATGCACTGCTGGAACGTACCATCAAGCATATGCTTTTTTTGCAGAGTGTGACAAAGCATGCTGACAAGCTGAAACAAACTGGGGATTCAAAGATATCTGCATCTGCATTAGCCTCTCACTGCATTCTTGCTTCATAA 2406 0.4235 MGFLLKEALKTLCGRNQWSYAVFWKIGCNNSKLLIWEECYYEPLPCSFPQPTFGNGEGSWFSSESRSSQMGIQEEDRVCSLINKMTVNNSVNIAGEGIIGRAAFTGNHQWILFNNFSRDAYPPEVYAEMHHQLSAGMQTVAVIPVLPHGVVQLGSFLPQCQPLQIMENIGFVNDVKSLILQLGCIPGALLSEDYSGSPSIGRALATGGLPVSVEPPGIPSHCIPSVSNGSNEQSNPSHVSRPTVQTLCPIRGEMNNFQGSVLTPKTHNLSQISNGYCQPNATTLIKTNFAGRSENRVVEAEVIPSSRGSCLQQPSVSYNARSAFNGLSSFGQSVASDCNLKYMEQQMMSVLGNQGHSNPSINASSTLNMSLLKTDGGHILDHNQSSSSASLLAGIPIHGGVSSLLRTSLVTDSGLRTPDVSVGDLSGAQGGGVGVKSDGSSEAGGSSLANLFSHSGSFTVPPQGSDQKLLSVDVKHVHDALPSKPVTTGDQSPDFVQDCVNKHVTGQSMVKNVKQEQVCAQPSSGDDLFDILGADFKNQLLSGNWDKLFAVGSESNTENMDKKPTCMNMQGMNSDYYSASEAISESDIFSGTGTDHLLDAVVSKTKSVMKQNSDDMSCRTTLTSSTCSVPSRAYKPAMPDHIQGGMFGIPKSEGKTGAVENSMRSGCIKDDDGKCSQTSSMFGSQLSSWVENSSKLKLENSVSTGYSKRPDEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGDSKISASALASHCILAS* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0701 801 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 178 IPR025610 -
Amo18g0701 801 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 789 IPR043561 GO:0003700|GO:0006355
Amo18g0701 801 MobiDBLite consensus disorder prediction 421 446 - -
Amo18g0701 801 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 721 770 IPR011598 GO:0046983
Amo18g0701 801 CDD bHLH_AtLHW_like 725 788 - -
Amo18g0701 801 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 789 - -
Amo18g0701 801 MobiDBLite consensus disorder prediction 711 735 - -
Amo18g0701 801 MobiDBLite consensus disorder prediction 701 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0701 Amo-Chr18 9584051 9589490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0701 500 788 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 45.395 3.73e-56 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0701 - - gmx:100791138 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0701 18 9584051 9589490 Amo13g1739 13 24896360 24902827 PCT
Amo13g1739 13 24896360 24902827 Amo18g0701 18 9584051 9589490 PCT