Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0689 ATGGGGTCTCGCATGGATCAGTACGAGATCATGGAGCAGATCGGCAGAGGAGCATTTGGAGCTGCAATTCTCGTTCATCACAAGACAGAGAAGAAAAAATATGTGTTGAAGAAAATAAGGCTTGCTAGGCAGACTGAAAGGTGCAGAAGAGCTGCACATCAAGAGATGGTTCTTATTGCTCGAATTCGGCACCCGTACATTGTGGAATTCAAAGAGGCTTGGGTTGAGAAGGGTTGCTTTGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAAACGGGGTATACTTTCCGGAGGAGAAACTCTGCAAGTGGTTTGCACAATTACTCTTAGCGGTGGAATATCTGCATTCCAATTATGTATTACATCGTGACTTAAAGTGTTCAAACATTTTTCTTACCAAGGATCAGGATGTTCGCTTAGGGGATTTTGGGCTTGCCAAGACACTAAAAGCAGATGATTTGGCATCTTCGGTGGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTGCAGATATTCCTTACGGATTCAAATCTGATATTTGGTCATTAGGGTGTTGTATATATGAAATGGCTGCTCATCGCCCTGCATTTAAAGCTTTTGATATGGCAGGATTGATAAGTAAGGTGAACCGTACCGCAATCGGCCCATTGCCTTCCTGTTATTCCCCATCTTTGAAAATGCTAATAAAGTGCATGCTGCGAAAAAATCCCGAGCATCGTTTATCAGCATCTGAGATCTTAAAACACCCCTATCTGCAACCTTATGTTGATCAATATCGTCCGTCTTTTTGTCCGCCTACAACCTGTTCTCCTCAAAAGTCTATTGGAGTTTTCCATGATCCTCGAAGAAATAGGCCTGAAAGCCAAAACAATAATAGCTCAAGCAGTGACAAAGATTGTTTGATATCAAATGAGAGAAACATGGAAATGGCAGAGCCAAATTTTGGTAGAGAAACCACAATTCAGGCATTAGTTGTTGATGATGGCTCTGAGTATCCCCTGCCCAGTGAAGAAGGAAATTGTTCCAGCAATGCTAAAACAGTAAAGGTGGTGAAGCCATCTCATAATGAAAACCATCCAAATATTGCATCTAAGGAACAAAACCTTTTCAAGAATACAATGATTGCTTTAAAAGACAGAAGAGTTAGAGAATCAAGTTCTCCAATGAGAGGCAATCACATAAAGGCTGGCAATGTATCCATCCAAAAAATAAATACAGAGATACCTTCCAAATTGCCCAAACCTAGTTTTGGTTTGAGGCCTAATTTAGAGGCACCAACTATTGCACCTGCAAAAGCAACCTTTGATTCTGCAAAGGGATCACATAGTTTAAAGTATCAGTTACCGATGACAGAATCATTGCCGAAAACCAGACCTCGAGATATTGTGACTCTGCCATCCGGCCGAACCAAACAAACAGTTGGAAATGGAGTTCCTGCCAAGCCAAGGCAAATGACTCCTCCAAGATCACTCAGACCACCTTCATCTCCAGTTCGTATGAGGCAGGCCAGGCTTGATTTTCCAAACATAGTGAATGATATAAGAAACTCGAATCCAGTGGTTCATGAGCCTAAGATAAGCCATCATAGGTTGACTAACAGTCATATACCACGTGTTTCGAGAGATATTAGGAAAGAGCCTCGGAAGTATTCTGAACATTGCTCAAAAGGAATGCAAACAGACAGCAGCAATTCAGTCTCATCTTCGGTGTCTATTCAAGGATTTGAACTTTGTGATGATGCAACTACTTTTATGGACTTGAGTGAACTCACACTTGCTGATCATGAGAGTATAAACCACATTGAGAATGTGGAATCACATCTAAATAGCAACTTGCCTCTTACGCATTCCGAGACATCTGAAGATGTGTCTTGGGAATCTGCAAGGCTTCCACGGAGCTTCCATAATAGCAATACAAGCAATGAGAATCTAAGTTCCACTTTATCTCAGGATCACTCAGTTCAAGATCATAAGGGAATTTTCGCTTCTGATGATGGTTGTCCCATAAATCGGACAACCATATCTGCTGCCTCAGGTTGTGGTAGAAAATCTCTACAGCCCTCTGCTTCAGCTGCAAAAGAATCAAAAGAGCTTCAAGACATTTCTGTGGAAACTACTTCAGCTAAGTCTCTGAAGCATCCAATTCCCATTTCTGAAGAGAAGTCTTCTTGTGAAGAAAGCACACCGGATAATAGGCCTGATAAAGATAGCCAACCAAAACTTATGATCACCCCAAGTGGTGATGAAGAATCCAAGGTAACCAAAAGATTGTCATCAGTGGCTGAAACAGATCCTCTGATAGTCTCCACTAAAATTCCAAGCCAGGACATTTTGCAAGAAGAGAAAGGAGCAGTTTTACAGAACACATCAGCTGAAATTTCATCTGCTGATCAACTTCCTCCAGCTTATGGTGATGTCATCCATGTTATACGGCATAGTAGTTATCGTGTCGGGAGTGAGCAGCCGGTGAAGGAATCTGTAGAAGTGGGAGTTCAAAATGTTGATGTTGGCAAGTTCATCAGCATTGTAAAGGATGATGCAGAGATGAGAAATGTAAGCACTCCTTTGGCCCTTAATTCTTCAGATTCTTCTGATCATTTAGAATCTCCAAGTTGCCCTGGCACGTTGAGTTTGGAATCAAGTACTCTTGACCAACCTACCATTAAGGATCAAGATTTGAAAAGCCCTGATTCTACAGTATCAAAATCTGATTCCACTAAATATGAGACTAGTACAGTCAAAGAGGAAACACAGGCAAAGGAAATTTTGGATGTGAAATCTTCAAGACAGAGAGCTGAGGCACTTGAAGGGCTCTTAGAACTTTCTGCAGACTTGCTGGAGCAGAACAAATTGGAGGAACTTTCAGTTGTTTTGAAGCCATTTGGAAAAGATAAGGTATCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTAATGATTGAGGATAGTGTGGGAAGAGCTTCATGA 3009 0.4164 MGSRMDQYEIMEQIGRGAFGAAILVHHKTEKKKYVLKKIRLARQTERCRRAAHQEMVLIARIRHPYIVEFKEAWVEKGCFVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFAQLLLAVEYLHSNYVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKVNRTAIGPLPSCYSPSLKMLIKCMLRKNPEHRLSASEILKHPYLQPYVDQYRPSFCPPTTCSPQKSIGVFHDPRRNRPESQNNNSSSSDKDCLISNERNMEMAEPNFGRETTIQALVVDDGSEYPLPSEEGNCSSNAKTVKVVKPSHNENHPNIASKEQNLFKNTMIALKDRRVRESSSPMRGNHIKAGNVSIQKINTEIPSKLPKPSFGLRPNLEAPTIAPAKATFDSAKGSHSLKYQLPMTESLPKTRPRDIVTLPSGRTKQTVGNGVPAKPRQMTPPRSLRPPSSPVRMRQARLDFPNIVNDIRNSNPVVHEPKISHHRLTNSHIPRVSRDIRKEPRKYSEHCSKGMQTDSSNSVSSSVSIQGFELCDDATTFMDLSELTLADHESINHIENVESHLNSNLPLTHSETSEDVSWESARLPRSFHNSNTSNENLSSTLSQDHSVQDHKGIFASDDGCPINRTTISAASGCGRKSLQPSASAAKESKELQDISVETTSAKSLKHPIPISEEKSSCEESTPDNRPDKDSQPKLMITPSGDEESKVTKRLSSVAETDPLIVSTKIPSQDILQEEKGAVLQNTSAEISSADQLPPAYGDVIHVIRHSSYRVGSEQPVKESVEVGVQNVDVGKFISIVKDDAEMRNVSTPLALNSSDSSDHLESPSCPGTLSLESSTLDQPTIKDQDLKSPDSTVSKSDSTKYETSTVKEETQAKEILDVKSSRQRAEALEGLLELSADLLEQNKLEELSVVLKPFGKDKVSPRETAIWLAKSLKGLMIEDSVGRAS* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0689 1002 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 985 - -
Amo18g0689 1002 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0689 1002 MobiDBLite consensus disorder prediction 866 917 - -
Amo18g0689 1002 MobiDBLite consensus disorder prediction 468 509 - -
Amo18g0689 1002 Gene3D Transferase(Phosphotransferase) domain 1 90 334 - -
Amo18g0689 1002 MobiDBLite consensus disorder prediction 285 310 - -
Amo18g0689 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Amo18g0689 1002 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 985 - -
Amo18g0689 1002 CDD STKc_Nek 7 262 - -
Amo18g0689 1002 MobiDBLite consensus disorder prediction 633 662 - -
Amo18g0689 1002 MobiDBLite consensus disorder prediction 689 722 - -
Amo18g0689 1002 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Amo18g0689 1002 MobiDBLite consensus disorder prediction 724 747 - -
Amo18g0689 1002 MobiDBLite consensus disorder prediction 866 925 - -
Amo18g0689 1002 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0689 1002 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0689 1002 MobiDBLite consensus disorder prediction 689 769 - -
Amo18g0689 1002 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Amo18g0689 1002 SUPERFAMILY Protein kinase-like (PK-like) 4 307 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0689 Amo-Chr18 9506779 9512708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0689 12 273 MAP Kinase Kinase Kinase AT3G06030 33.692 6.26e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Amo18g0689 Pkinase 7.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0689 K08857 - gmx:100780141 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0689 18 9506779 9512708 Amo18g0689 18 9506779 9512708 ECH
Amo18g0689 18 9506779 9512708 Amo13g1693 13 23596549 23602892 PCT
Amo13g1693 13 23596549 23602892 Amo18g0689 18 9506779 9512708 PCT