Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0682 AGTAAAGAACAGAACAACATAACCCTCTCTGACACCAAACCCTTTTATCTTCACCTTCGAATCATGGTGGACACGGATTCAAGCGAAGCACACATGTCAATAGCAGCTTCTTCCATATTCCCTGGCTTCAGGTTCTGTCCCACTGACGAGGAGTTGATCTCTTATTACCTCAGGAAAAAGCTGGACGGTGATGAAGACAGTGTTCAAGTCATTTCGAAGCTTGAACTTTGCACTTTTGAGCCTTGGGATTTGCCAGGAAAATCTTTCATTCAATCAGACACCGAGTGGTTTTTCTTCTCGCCACGGGGGAGAAAGTATCCCAATGGTTCACAGAGTAAAAGGGCAACTGAATGTGGGTATTGGAAGGCCACAGGAAAAGAACGCATCGTAAAATCCGGTCAGGATGTTATTGGTACCAAACGCACTTTAGTATTTCATCTTGGTCGAGCTCCTAAAGGCGAAAGAACTGAATGGATTATGCATGAGTACTGTGTCAATGACAAATCTCAGGATTCATTGGTGATTTGTCGGCTGAAGAAAAATACAGAATTTCGTGCTAATGATCATTCTAATAAAACTTCACATGATAGTGATTGTGGAGTCTCAGAAGGAGCTACAGTTCAAGGGGGCACTTATGTGCCTATTCAAGACAAAGAAACTGGATGCAGCTCCAAGAGAACTAGCAGTAGTAATAGTTCTCCTTCTACTACTACTGGCCAAATTGAATCCAGTCATAGAGTTGTCAATGAAGCCAATCAAGCCAATGAAGTGGACGAAGATGATTGTTATGCAGAGATCCTAAATGATGATATCATCAAGTTAGATGAATCAACACTCTCACGGCCATCGCCACCACAAGGGACAGCAAACAGGAGAATCAGGCTAAGGGTTCCCAAATCAACAGTTCCCAAATCAAGGGTTCCCAAATCAACGGTTCCAACAGGAAATGGTTGCCATTGCTCCACGCAATCATCAAACAAAATTAACACCTTCCTGCCATATGCTTTGGTGGTCTTCACTTTCTTCGTTTTCACTTTGTTAGCTCTAGGCTTCTTTCTTATTAGGAGGTCCCAAACTACTGCGCAATATTCTCGAGACCTCTCTAGAGTTAATTAA 1116 0.4265 SKEQNNITLSDTKPFYLHLRIMVDTDSSEAHMSIAASSIFPGFRFCPTDEELISYYLRKKLDGDEDSVQVISKLELCTFEPWDLPGKSFIQSDTEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERIVKSGQDVIGTKRTLVFHLGRAPKGERTEWIMHEYCVNDKSQDSLVICRLKKNTEFRANDHSNKTSHDSDCGVSEGATVQGGTYVPIQDKETGCSSKRTSSSNSSPSTTTGQIESSHRVVNEANQANEVDEDDCYAEILNDDIIKLDESTLSRPSPPQGTANRRIRLRVPKSTVPKSRVPKSTVPTGNGCHCSTQSSNKINTFLPYALVVFTFFVFTLLALGFFLIRRSQTTAQYSRDLSRVN* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0682 371 SUPERFAMILY NAC domain 31 180 IPR036093 GO:0003677|GO:0006355
Amo18g0682 371 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 33 325 - -
Amo18g0682 371 Pfam No apical meristem (NAM) protein 41 164 IPR003441 GO:0003677|GO:0006355
Amo18g0682 371 MobiDBLite consensus disorder prediction 187 247 - -
Amo18g0682 371 ProSiteProfiles NAC domain profile. 39 181 IPR003441 GO:0003677|GO:0006355
Amo18g0682 371 Gene3D NAC domain 48 186 IPR036093 GO:0003677|GO:0006355
Amo18g0682 371 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 33 325 - -
Amo18g0682 371 MobiDBLite consensus disorder prediction 217 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0682 Amo-Chr18 9359222 9361148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0682 27 285 NAC Transcription Factor Family AT2G27300 56.818 2.16e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo18g0682 NAM 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0682 - - adu:107462050 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0682 18 9359222 9361148 Amo18g0682 18 9359222 9361148 ECH