Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0654 ATGCAACAAACAACAATGGCAGTTTCTGGAACAAAAACCATTTCTCATGAAACCCTTACACAAGAATTGTTACAATCAGAAGCAGCAGAACCAGTGAGCAAGCAGAACTCAATCCTCTCACTCACACTTGATGAGATCCAATGCAAGAGTGGTAAGAGCTTTGGATCCATGAGCATGGATGAATTCTTAGCCAGCATTTGGAGCTCTGAGGACAACAACAACAACAACAACAACAACACAAATCAAACCCTTCATGATGAACAAGCTTCTCAACACATCATGAAAAGTGCTGGAACAAAAACAGAACAACAACAACAAGGTTCATTCTGTGTCATCCCATCTCCAATTTGCAAGAAAACTGTGGAGGAAGTTTGGTCTGAGATCCACAAAGACCAAGAACCACAACAAAGGGATGAATCTAACAACATTGGAATGAATGAGGCACTTAGAAAGCAACAAACACTTGGGGAAATGACATTGGAGGATTTTCTAATTAAAGCTGGTGTTGTACAAGAATCAAAATTAACATCAAAATCAAGAGTTGCTACTACAACAATAATGCCTTTAGTATTTCAGAATCATGTTAGCAACATTGCAAGTAGTAATAGACCAATGGATCCAAGTTATGCAGTGAGGTCTCCTATGGGAGTAGGATTCCCTAGCCAACAAAATCTTGGGAACCATGGGACTAATAACAATGGACTTGGAACATATCCAATTTTGTTACAGAATAATAATAGCTCCACAAGGCTTCTGGACTCGAGCGTGGGCAGCAGCAGGAAGAGGGTAATTGATGGTCCTCCAGAAGTGGTGGTAGAGCGAAGGCAGCGCAGAATGTTGAAGAATCGAGAATCTGCTGCAAGATCACGGGCGAGAAGACAGGCATATACGGTTGAGCTAGAAGCAGAGCTGAATGTGCTAAAGGAAGAGAATGAGAATCTAAAACAAATTCTGGATGAAGCAGAGCTCAAGAGGAAACAAGAGATTTCACAGAGGAAGCACACAACAAAGGCACAAAAGAGGACAGAAAAATTGAGGGAAATAAGAAGGACTATTAGTGCAGCTTGGTGA 1071 0.4118 MQQTTMAVSGTKTISHETLTQELLQSEAAEPVSKQNSILSLTLDEIQCKSGKSFGSMSMDEFLASIWSSEDNNNNNNNNTNQTLHDEQASQHIMKSAGTKTEQQQQGSFCVIPSPICKKTVEEVWSEIHKDQEPQQRDESNNIGMNEALRKQQTLGEMTLEDFLIKAGVVQESKLTSKSRVATTTIMPLVFQNHVSNIASSNRPMDPSYAVRSPMGVGFPSQQNLGNHGTNNNGLGTYPILLQNNNSSTRLLDSSVGSSRKRVIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTVELEAELNVLKEENENLKQILDEAELKRKQEISQRKHTTKAQKRTEKLREIRRTISAAW* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0654 356 Coils Coil 297 331 - -
Amo18g0654 356 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 356 IPR043452 GO:0003700|GO:0045893
Amo18g0654 356 SMART brlzneu 270 334 IPR004827 GO:0003700|GO:0006355
Amo18g0654 356 PANTHER BZIP TRANSCRIPTION FACTOR 29 356 - -
Amo18g0654 356 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 272 320 IPR004827 GO:0003700|GO:0006355
Amo18g0654 356 SUPERFAMILY Leucine zipper domain 274 320 IPR046347 GO:0003700|GO:0006355
Amo18g0654 356 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 277 292 IPR004827 GO:0003700|GO:0006355
Amo18g0654 356 Pfam bZIP transcription factor 274 322 IPR004827 GO:0003700|GO:0006355
Amo18g0654 356 Gene3D - 272 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0654 Amo-Chr18 9109130 9111587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0654 16 356 bZIP Transcription Factor Family AT3G44460 46.067 6.88e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo18g0654 bZIP_1 8e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0654 K14432 - gmx:100799576 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0654 18 9109130 9111587 Amo18g0654 18 9109130 9111587 ECH
Amo16g2387 16 101093207 101097846 Amo18g0654 18 9109130 9111587 ECH
Amo12g3473 12 123952502 123955518 Amo18g0654 18 9109130 9111587 ECH